Fix MCP initialize and logging gaps - #2673
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…840-1837-1895 # Conflicts: # src/CodeIndex/Mcp/McpToolHandlers.cs
…840-1837-1895 # Conflicts: # src/CodeIndex/Mcp/McpServer.cs # src/CodeIndex/Mcp/McpToolHandlers.cs
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Summary
logging/setLevelwith standard MCP log levels.origin/main.mcp_session.Validation
dotnet test tests/CodeIndex.Tests/CodeIndex.Tests.csproj -c Release -p:UseSharedCompilation=false --filter "FullyQualifiedName~DocumentationStatusContractTests|FullyQualifiedName~McpServerTests"dotnet build CodeIndex.sln -c Release -p:UseSharedCompilation=falseNo blocking/actionable issues found.Notes
AGENT_GUIDE.mdwas updated only to keep the documented status contract synchronized with README and DEVELOPER_GUIDE..cdidxindex rebuild attempts were interrupted in this environment; build, targeted tests, and adversarial review were used for validation.Fixes #1836
Fixes #1837
Fixes #1840
Fixes #1895