Factorize common workflow generation functionality.#147

Merged

eladrion merged 10 commits intomainfrom

137_use_stdlib_commons_functionality

Feb 9, 2026

Commits on Feb 9, 2026

Extrapolate basic functionality for workflow files generation into `SolutionCreationUtils` and also replace dependent padding (`if (stepNumber < 10)`) by String format flags
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[Fix/Refactor] Replace `getOutputTypes()` in `generateRuleInput()` with `getInputTypes()` and refactor the functions `generateRuleInput()` and `generateRuleOutput()` such that String join is used m…
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[Refactor] Replace another append chain by string format.
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[Refactor] Remove unused function
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[FIX] Add missing Builder functionality for Snakemake
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[FIX] Change variable names to CamelCase
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[Refactor] Extrapolate preparation of output directory as separate method and additionally make configuration checking for outputs consistent in all methods.
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[Update] Extrapolate `getWorkflowName` and remove trailing prime symbol.
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[FIX] Resolving import issues.
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[FIX] Removing stale placeholder from logging info.
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