Add support for skipping partial shell script creation.#149

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eladrion merged 3 commits intomainfrom

50_improve_shell_script_generation

Feb 9, 2026

Commits on Jan 27, 2026

[FIX] Implement a configuration option `create_partial_scripts` (`false` by default) and only create partial scripts with missing tool information as comment if set to `true`. Otherwise, log output…
eladrion
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[Update] Set partial script generation to true as default, extend support for restricting to full implementations for CWL and snakemake by leveraging "CWL file reference" and "code".
eladrion
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[Update] Use loglevel `info` since missing commands are not an error. Instead, we inform the user that the file was not generated.
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