The official documentation of the Workflomics publication metric, pubmetric, is available in the Workflomics documentation
pubmetric is a library for benchmarking workflows based on the co-citation network connectivity of the publications describing the tools making up the workflow.
First start Cytoscape, then open your notebook environment and run the code.
Python packages listed in the setup.py file. You can install them using the following command: pip install .
For the development, you can include the test dependencies by running pip install .[test]
Cytoscape software, which can be downloaded from https://cytoscape.org/. Please make sure Cytoscape is open and running when executing the code.
This project is licensed under the Apache License 2.0.