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add jvm as a parameter not a hardcoded value

Status: Open.

#51 In ZSI-Bio/CNV-opt;

· mwiewior opened on Jul 19, 2017

refactor code to read read_count instead of cov_avg

Status: Open.

#49 In ZSI-Bio/CNV-opt;

· mwiewior opened on Jul 19, 2017

Rewrite insert stmt into dbWriteTable

Status: Open.

#48 In ZSI-Bio/CNV-opt;

· mwiewior opened on Jul 19, 2017

check why depends does not work

bug

Status: Open.

#47 In ZSI-Bio/CNV-opt;

· mwiewior opened on Jul 19, 2017

Add jdbc driver(hive,pgsql) to the zsi-bio-base-docker image

Status: Open.

#45 In ZSI-Bio/CNV-opt;

· mwiewior opened on Jul 19, 2017

Add an option to either download jdbc driver from url or using a local path

Status: Open.

#44 In ZSI-Bio/CNV-opt;

· mwiewior opened on Jul 19, 2017

Document luaching in a Docker container

Status: Open.

#43 In ZSI-Bio/CNV-opt;

· mwiewior opened on Jul 19, 2017

add column with number of reads

Status: Open.

#42 In ZSI-Bio/CNV-opt;

· mwiewior opened on Jul 19, 2017

add another id to identify group of chr from a single run (set of parametrs)

enhancement

Status: Open.

#41 In ZSI-Bio/CNV-opt;

· mwiewior opened on Jul 16, 2017

R dbDisconnect does not close the session

Status: Open.

#40 In ZSI-Bio/CNV-opt;

· mwiewior opened on Jul 16, 2017

read and write to db

Status: Open.

#28 In ZSI-Bio/CNV-opt;

· tgambin opened on Jul 12, 2017

run_cnvcaller - parameters from db

Status: Open.

#27 In ZSI-Bio/CNV-opt;

· tgambin opened on Jul 12, 2017