SET2BIDS v2 to main

.eslintrc.json

@@ -1,5 +1,5 @@
 {
-  "parser": "babel-eslint",
+  "parser": "@babel/eslint-parser",
   "plugins": [
     "react"
   ],
@@ -34,8 +34,8 @@
     "react/no-unescaped-entities": "off",
     "react/prop-types": "off",
     "linebreak-style": "off",
-    "spaced-comment": "off",
-    "no-unused-vars": "off",
+    "spaced-comment": "error",
+    "no-unused-vars": "error",
     "require-jsdoc": "error",
     "no-console": ["warn", {
       "allow": ["info", "warn", "error"]

.gitattributes

@@ -0,0 +1,2 @@
+python/tools/mff_to_set.exe filter=lfs diff=lfs merge=lfs -text
+.exe filter=lfs diff=lfs merge=lfs -text

.gitignore

@@ -4,7 +4,6 @@
 .spec
 .python-version
 node_modules/
-package-lock.json
 logs/*.log
 VERSION
 venv/
@@ -14,7 +13,6 @@ lib/
 lib64/
 bin/
 include/
-*.spec
 pyvenv.cfg
 Scripts/
 Lib/

.vscode/settings.json

@@ -0,0 +1,5 @@
+{
+    "search.exclude": {
+        "**/node_modules": false
+    }
+}

README.md

@@ -1,6 +1,6 @@
-![EEG2BIDS Wizard](wiki/images/logo/EEG2bIDS_Wizard_(converter_tool).jpg)
+![SET2BIDS Wizard](wiki/images/logo/EEG2bIDS_Wizard_(converter_tool).jpg)
 
-EEG2BIDS Wizard is a GUI interface for iEEG to BIDS format and used with LORIS (Longitudinal Online Research and Imaging System). Users can use their LORIS credentials with a LORIS URL and automatically retrieve LORIS data for the EEG to BIDS format. Becareful to remove your login credentials after using EEG2BIDS on a shared computer!
+SET2BIDS Wizard is a GUI interface for iEEG to BIDS format and used with LORIS (Longitudinal Online Research and Imaging System). Users can use their LORIS credentials with a LORIS URL and automatically retrieve LORIS data for the EEG to BIDS format. Becareful to remove your login credentials after using SET2BIDS on a shared computer!
 
 ## Installation
 

TODO.txt

@@ -0,0 +1,3 @@
+TODO
+// Clean parameters in socketContext.emit('eeg_to_bids') (Converter)
+// API next stage + create visit: config option (endpoint may not exist)

build.ps1

@@ -1,6 +1,6 @@
 .\Scripts\activate
-pyinstaller --paths=python python/eeg2bids.py -F `
---name eeg2bids-service-windows `
+pyinstaller --paths=python python/set2bids.py -D `
+--name set2bids-service-windows `
 --add-data 'python/libs/bids_validator/rules/top_level_rules.json;./bids_validator/rules' `
 --add-data 'python/libs/bids_validator/rules/associated_data_rules.json;./bids_validator/rules' `
 --add-data 'python/libs/bids_validator/rules/file_level_rules.json;./bids_validator/rules' `
@@ -34,6 +34,9 @@ pyinstaller --paths=python python/eeg2bids.py -F `
 --add-data 'python/libs/mne/channels/data/montages/standard_postfixed.elc;./mne/channels/data/montages' `
 --add-data 'python/libs/mne/channels/data/montages/standard_prefixed.elc;./mne/channels/data/montages' `
 --add-data 'python/libs/mne/channels/data/montages/standard_primed.elc;./mne/channels/data/montages' `
+--add-data 'Lib/site-packages/mne;mne' `
+--add-data 'Lib/site-packages/mne_bids;mne_bids' `
+--add-data 'src/config.json;src' `
 --hidden-import=eventlet.hubs.epolls `
 --hidden-import=eventlet.hubs.kqueue `
 --hidden-import=eventlet.hubs.selects `

build.sh

@@ -1,13 +1,16 @@
-source bin/activate
-pyinstaller --paths=python python/eeg2bids.py -w -F \
---name eeg2bids-service \
+source python/bin/activate
+pyi-makespec --paths=python python/set2bids.py -w -D \
+--name set2bids-service \
 --add-data 'python/libs/bids_validator/rules/top_level_rules.json:bids_validator/rules' \
 --add-data 'python/libs/bids_validator/rules/associated_data_rules.json:bids_validator/rules' \
 --add-data 'python/libs/bids_validator/rules/file_level_rules.json:bids_validator/rules' \
 --add-data 'python/libs/bids_validator/rules/phenotypic_rules.json:bids_validator/rules' \
 --add-data 'python/libs/bids_validator/rules/session_level_rules.json:bids_validator/rules' \
 --add-data 'python/libs/bids_validator/rules/subject_level_rules.json:bids_validator/rules' \
 --add-data 'python/libs/bids_validator/tsv/non_custom_columns.json:bids_validator/tsv' \
+--add-data 'python/lib/python3.8/site-packages/mne/:mne' \
+--add-data 'python/lib/python3.8/site-packages/mne_bids/:mne_bids' \
+--add-data 'src/config.json/:src' \
 --hidden-import=eventlet.hubs.epolls \
 --hidden-import=eventlet.hubs.kqueue \
 --hidden-import=eventlet.hubs.selects \
@@ -17,5 +20,4 @@ pyinstaller --paths=python python/eeg2bids.py -w -F \
 --hidden-import=dns.version  --hidden-import=dns.zone \
 --hidden-import=engineio.async_drivers.eventlet \
 --hidden-import=json \
---hidden-import=csv \
---clean
+--hidden-import=csv

import-mne.py

@@ -0,0 +1,15 @@
+import mne
+import os
+from mne_bids import write_raw_bids, BIDSPath
+
+print(mne.sys_info())
+file = r'C:\Users\Lae\Documents\test_data\DCC0003_444597_V01_FACE.set'
+bids_directory = r'C:\Users\Lae\Documents\test_data'
+raw = mne.io.read_raw_eeglab(input_fname=file, preload=False, verbose=True)
+
+os.makedirs(bids_directory + os.path.sep, exist_ok=True)
+bids_directory = bids_directory + os.path.sep
+bids_root = bids_directory
+bids_basename = BIDSPath(subject='001', task='test', root=bids_root, acquisition='eeg', run=None)
+bids_basename.update(session='V1')
+write_raw_bids(raw, bids_basename, allow_preload=False, overwrite=False, verbose=True)