Skip to content

Fix 'Graph' object has no attribute 'node'#84

Open
jaryaman wants to merge 5 commits intoakelleh:masterfrom
jaryaman:master
Open

Fix 'Graph' object has no attribute 'node'#84
jaryaman wants to merge 5 commits intoakelleh:masterfrom
jaryaman:master

Conversation

@jaryaman
Copy link
Copy Markdown

Fix for #82, making the module compatible with NetworkX 2.4, see here

jaryaman added 5 commits June 21, 2020 19:58
* Fix networkx node deprecation error

* Fix test_build_g
* Fix networkx node deprecation error

* Fix test_build_g

* Resolve #4 by replacing tuple with list
* Resolve #6

* Resolve #8
@danielpcox
Copy link
Copy Markdown

danielpcox commented Sep 18, 2020

I've tested this successfully. Thanks!

pytest $HOME/.local/share/virtualenvs/rca-09xp6Szh/src/causality                                    2020-09-18 14:07:08
======================================================================= test session starts ========================================================================
platform linux -- Python 3.8.3, pytest-6.0.2, py-1.9.0, pluggy-0.13.1
rootdir: /home/daniel.cox/.local/share/virtualenvs/rca-09xp6Szh/src/causality
collected 10 items

../../.local/share/virtualenvs/rca-09xp6Szh/src/causality/tests/unit/test_IC.py ........                                                                     [ 80%]
../../.local/share/virtualenvs/rca-09xp6Szh/src/causality/tests/unit/test_cit.py ..                                                                          [100%]

========================================================================= warnings summary =========================================================================
/home/daniel.cox/.local/share/virtualenvs/rca-09xp6Szh/lib/python3.8/site-packages/patsy/constraint.py:13
  /home/daniel.cox/.local/share/virtualenvs/rca-09xp6Szh/lib/python3.8/site-packages/patsy/constraint.py:13: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working
    from collections import Mapping

-- Docs: https://docs.pytest.org/en/stable/warnings.html
================================================================== 10 passed, 1 warning in 5.86s ===================================================================

Also, here's the output on the README examples.

image

@zjcanjux
Copy link
Copy Markdown

zjcanjux commented Mar 2, 2021

/causality/plot/init.py", line 36, in plot_marked_partially_directed_graph
edge_labels={e: '*' for e in edges_ICstar['marked']}, arrowsize=arrowsize)
TypeError: draw_networkx_edge_labels() got an unexpected keyword argument 'arrows'

test plot_marked_partially_directed_graph , one error occur

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants