Skip to content

Update README with detailed '-e' switch options #201

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
sebschmi merged 1 commit into from
Aug 10, 2026
Merged

Update README with detailed '-e' switch options #201

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
3 changes: 2 additions & 1 deletion README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -260,7 +260,8 @@ There are additional switches and parameters to influence the visualisation.

* `-a` adds arrows for the jumps of the alignments
* `-c` renders more of the complements of the input sequences
* `-e` renders the heuristically computed uncertainties of a TSM with grey characters
* `-e inner-only` renders the heuristically computed uncertainties of a TSM with blue characters in the TSM inner alignment
* `-e full` or just `-e` renders the heuristically computed uncertainties of a TSM with blue characters in the TSM inner alignment and the source sequences
Comment thread
sebschmi marked this conversation as resolved.
* `-z X` renders only `X` bases of context around the TSMs

```bash
Expand Down
Loading