This repository is used for the two classes "genome and transcriptome assembly" and "organization and annotation of eucaryote genomes". The scripts used for the first part can be found in the folder scripts, while the scripts for the latter part are in the folder scripts_annotation.

The histogram result from kmere_counting from the genome and transcriptome assembly class can be found at: http://genomescope.org/genomescope2.0/analysis.php?code=NwmERHY3LWSIBdqqmW9h These results were obtained by setting the Max k-mer coverage to 5000, because otherwise there is a peak around 9000. This peak is most likely due to the chloroplasts and mitochondria. Not correcting for it will result in a bad estimation of the length of the DNA.