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Atlas generation, Resource optimised clustering and Rcpp heatmaps#31

Merged
iraiosub merged 69 commits intodevfrom
feat-atlas
Apr 7, 2025
Merged

Atlas generation, Resource optimised clustering and Rcpp heatmaps#31
iraiosub merged 69 commits intodevfrom
feat-atlas

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@amchakra amchakra commented Apr 7, 2025

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amchakra and others added 30 commits July 16, 2022 08:24
Cluster everything
Cluster
Fixed )
Removed deprecated conda profile
Fixed bug in logic of chunk size and splitting
Added inter-transcript contact maps
Typo in logging
Shifted percent overlap first pass to bedtools
Added Rcpp matrix generation fx
Commented out segment workaround
blat and identify all in one
Added Rcpp matrix generation
Remove temporary bedpe files
Added BLAT_ALL_IN_ONE to resources
Started create atlas only option
Missing param
Added workflow
typo
Restructured
@amchakra amchakra requested a review from iraiosub April 7, 2025 07:47
@amchakra amchakra self-assigned this Apr 7, 2025
@amchakra amchakra added the enhancement New feature or request label Apr 7, 2025
@amchakra amchakra linked an issue Apr 7, 2025 that may be closed by this pull request
@iraiosub iraiosub merged commit 95b43fa into dev Apr 7, 2025
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@amchakra amchakra changed the title Atlas generatation, Resource optimised clustering and Rcpp heatmaps Atlas generation, Resource optimised clustering and Rcpp heatmaps Apr 7, 2025
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Create workflow just to generate atlas

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