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PiperFileRunner

Sean Finan edited this page Feb 9, 2026 · 1 revision

final public class PiperFileRunner

Runs the pipeline in the piper file specified by -p (piperfile) with any other provided arguments. Standard arguments are: -i , --inputDir {inputDirectory} -o , --outputDir {outputDirectory} -s , --subDir {subDirectory} (for i/o) --xmiOut {xmiOutputDirectory} (if different from -o) -l , --lookupXml {dictionaryConfigFile} (fast only) --key {umlsKey} -? , --help Other parameters may be declared in the piper file using the cli command: cli {parameterName}={singleCharacter} For instance, for declaration of ParagraphAnnotator path to regex file optional parameter PARAGRAPH_TYPES_PATH, in the custom piper file add the line: cli PARAGRAPH_TYPES_PATH=t and when executing this class use: PiperFileRunner( -p, path/to/my/custom.piper, -t, path/to/my/custom.bsv ... );

  • Author: SPF , chip-nlp
  • Version: %I%
  • Since: 10/13/2016

public static void main( final String... args )

  • Parameters:
    • args general run options

public static boolean run( final String... args )

  • Parameters:
    • args general run options

Apache cTAKES

ctakes-core API

Python API

ctakes-core

patient
    AbstractPatientConsumer
    AbstractPatientFileWriter
    PatientNoteCollector
    PatientNoteStore
    PatientViewUtil
pipeline
    PipeBitLocator
    PipelineBuilder
    PiperFileReader
    PiperFileRunner
resource
    FileLocator
util
    CalendarUtil
    MutableUimaContext
    NumberedSuffixComparator
    Pair
    RelationArgumentUtil
    StringUtil
     annotation
         ConceptBuilder
         EssentialAnnotationUtil
         IdentifiedAnnotationBuilder
         IdentifiedAnnotationUtil
         OntologyConceptUtil
         SemanticGroup
         SemanticTui
     doc
         DocIdUtil
         JCasBuilder
         TextBySectionBuilder
         TextBySentenceBuilder
     log
         DotLogger
         FinishedLogger
     regex
         RegexSpanFinder
         TimeoutMatcher
     textspan
         DefaultAspanComparator
         DefaultTextSpanComparator
         DefaultTextSpan
         TextSpan



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