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fix issue #9 #12

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fix issue #9 #12

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4 changes: 2 additions & 2 deletions src/biograpy.egg-info/PKG-INFO
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
Metadata-Version: 1.0
Metadata-Version: 1.1
Name: biograpy
Version: 1.0bdev
Version: 1.0b0.dev0
Summary: UNKNOWN
Home-page: UNKNOWN
Author: Andrea Pierleoni
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2 changes: 1 addition & 1 deletion src/biograpy.egg-info/requires.txt
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
setuptools
biopython
matplotlib>=1.0
numpy>=1.1
numpy>=1.1
4 changes: 2 additions & 2 deletions src/biograpy/__init__.py
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
from drawer import Panel
from seqrecord import SeqRecordDrawer, SliceSeqRec
from biograpy.drawer import Panel
from biograpy.seqrecord import SeqRecordDrawer, SliceSeqRec

__import__('pkg_resources').declare_namespace(__name__)
2 changes: 1 addition & 1 deletion src/biograpy/drawer.py
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@

import matplotlib, warnings, operator
matplotlib.use('Agg')
import tracks
import biograpy.tracks
from matplotlib.font_manager import FontProperties

warnings.simplefilter("ignore")
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4 changes: 2 additions & 2 deletions src/biograpy/seqrecord.py
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Expand Up @@ -274,7 +274,7 @@ def draw_features_ordered_by_gene_struct(self,gene_code=None):
gene_name=' - '.join(Lgene_name)
break
if not gene_code:
raise ValueError, "Cannot draw gene structure, without a gene code"
raise ValueError("Cannot draw gene structure, without a gene code")



Expand Down Expand Up @@ -390,7 +390,7 @@ def SliceSeqRec(seqrec,start=None,end=None,include_feature=[],exclude_feature=[]
if end is None :
end = -1
if (start < 0 or end < 0) and parent_length == 0 :
raise ValueError, "Cannot support negative indices without the sequence length"
raise ValueError("Cannot support negative indices without the sequence length")
if start < 0 :
start = parent_length - start
if end < 0 :
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