Add BayesWHAM driver and configuration examples#33

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arminshzd wants to merge 7 commits intoreweightfrom

codex/implement-bayeswham-algorithm-in-bwham.py

Commits on Dec 8, 2025

Commits on Dec 16, 2025

add logging to bwham. expose bwham to cli.
arminshzd
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Commits on Dec 17, 2025

new output and error reporting
arminshzd
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Commits on Dec 18, 2025

handle zero weight in reweight. handle edge samples in wham outputs. The aux output now tracks the discarded sampels as well to prevent mismatch between the number of samples between the original a…
arminshzd
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Commits on Dec 20, 2025

fix to the periodic behavior
arminshzd
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