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paper
paper
 
 
.gitignore
.gitignore
 
 
ANALYSIS_NOTES.md
ANALYSIS_NOTES.md
 
 
README.md
README.md
 
 
analyze_cell_contacts.py
analyze_cell_contacts.py
 
 
analyze_cell_morphology.py
analyze_cell_morphology.py
 
 
analyze_cell_morphology_normalized.py
analyze_cell_morphology_normalized.py
 
 
analyze_curvature.py
analyze_curvature.py
 
 
analyze_curvature_mesh.py
analyze_curvature_mesh.py
 
 
analyze_ecs_cell_volumes.py
analyze_ecs_cell_volumes.py
 
 
analyze_ecs_width.py
analyze_ecs_width.py
 
 
analyze_ecs_width_filtered.py
analyze_ecs_width_filtered.py
 
 
cell_contacts.csv
cell_contacts.csv
 
 
cell_contacts_by_prep.png
cell_contacts_by_prep.png
 
 
cell_curvature.csv
cell_curvature.csv
 
 
cell_curvature_mesh.csv
cell_curvature_mesh.csv
 
 
cell_morphology_by_prep.png
cell_morphology_by_prep.png
 
 
cell_morphology_contacts.csv
cell_morphology_contacts.csv
 
 
cell_morphology_crops.csv
cell_morphology_crops.csv
 
 
cell_morphology_normalized.csv
cell_morphology_normalized.csv
 
 
cell_morphology_per_cell.csv
cell_morphology_per_cell.csv
 
 
crop_annotations.csv
crop_annotations.csv
 
 
distributions_per_crop.png
distributions_per_crop.png
 
 
ecs_analysis_summary.png
ecs_analysis_summary.png
 
 
ecs_by_prep_type.png
ecs_by_prep_type.png
 
 
ecs_cell_volumes.csv
ecs_cell_volumes.csv
 
 
ecs_width.csv
ecs_width.csv
 
 
ecs_width_by_prep.png
ecs_width_by_prep.png
 
 
ecs_width_filtered.csv
ecs_width_filtered.csv
 
 
plot_cell_contacts.py
plot_cell_contacts.py
 
 
plot_cell_morphology.py
plot_cell_morphology.py
 
 
plot_distributions.py
plot_distributions.py
 
 
plot_ecs_by_prep.py
plot_ecs_by_prep.py
 
 
plot_ecs_width.py
plot_ecs_width.py
 
 
plot_summary.py
plot_summary.py
 
 

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ecs-analysis

Analysis code and manuscript materials for the extracellular space (ECS) project.

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