Resources for data analysis in LNCM / Dudok lab Recently updated to leave Python 3.6 behind - now all code works in the same 3.11 env. Reach out if you need help with the transition.
detect epileptic spikes on LFP
detect seizures and compute seizure burden time series using spike times as input
read EDF files exported by the Pinnacle recorder
load treadmill data from PyControl file
all scanbox reader classes made during Soltesz lab times
classes for reading BCM Dudok lab raw data recorded on the Bruker setup
processing pipeline and GUI; ImagingSession and related classes
find imaging sessions in self hosted database
SpikeSzDet - tune and save spike detection settings for a set of sessions, run seizure detection SzViewGUI - review EEG with synced video, manually curate and edit automatically detected seizures
GUI for processing and inspecting ImagingSession
Apps for controlling cameras and acquisition https://github.com/bdudok/Recorder.git
Remote acquisition control, task configuration and treadmill build info https://github.com/bdudok/PyControl_LNCM.git