Treg Research Assistant

A RAG-powered "Concierge Agent" for Treg cell therapy research, built for the Kaggle Agents Intensive Capstone.

Overview

This agent assists bioinformaticians by:

• Retrieving relevant literature from PubMed.
• Finding clinical trials from ClinicalTrials.gov.
• Answering questions about experiment design (e.g., flow cytometry panels, cytokine cocktails).

Demo

Quick Start

Backend

1. cd backend
2. pip install -r requirements.txt
3. export GOOGLE_API_KEY="your-key" or edit .env on root directory
4. python data_ingestion.py (Fetch data)
5. python api_server.py (Start server)

Frontend

1. cd frontend
2. npm install
3. npm run dev

Tech Stack

see details on design_logic.md

• Backend: Python, FastAPI, LlamaIndex, ChromaDB.
• AI Engine: Google Gemini (via llama-index-llms-gemini).
• Frontend: React, Vite, TailwindCSS.
• Data: PubMed E-utilities, ClinicalTrials.gov API.