adds git-drs #59
adds git-drs #59
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Pull request overview
This pull request adds comprehensive documentation for the git-drs tool and reorganizes the documentation structure from docs/workflows/, docs/tools/, and docs/requirements.md to a new docs/calypr/ hierarchy. The PR involves significant documentation migration and new content addition.
Changes:
- Adds complete git-drs documentation (installation, getting started, commands, troubleshooting)
- Adds GRIP and Funnel tool documentation
- Migrates and updates existing workflow documentation to reference git-drs instead of g3t
- Removes old documentation structure and files
Reviewed changes
Copilot reviewed 27 out of 120 changed files in this pull request and generated no comments.
Show a summary per file
| File | Description |
|---|---|
| docs/calypr/tools/git-drs/* | New comprehensive git-drs documentation including installation guide, getting started, commands reference, troubleshooting, and S3 integration |
| docs/calypr/tools/grip/* | New GRIP graph database tool documentation with tutorials, queries, and configuration |
| docs/calypr/tools/funnel/* | New Funnel task execution tool documentation with compute backends and storage options |
| docs/calypr/projects/workflows/* | Updated workflow documentation replacing g3t with git-drs |
| docs/calypr/data-management/* | New data management documentation for FHIR metadata |
| docs/workflows/status.md | Deleted old status documentation |
| docs/tools/git-drs/docs/developer-guide.md | Deleted old developer guide |
| docs/requirements.md | Deleted old requirements documentation |
| docs/tools/.nav.yml | Deleted old navigation structure |
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I kind of liked having the tools as a separate section from the full platform. Putting them under Calypr buries them a bit |
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I think the DRS motivation should lean harder on GA4GH. Maybe point to https://www.ga4gh.org/product/data-repository-service-drs/ and mention some of the use cases |
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Tip Live site → https://calypr.github.io/calypr/data-management PR #41 site preview → https://deploy-preview-41--calypr.netlify.app/calypr/data-management |
Adds git-drs