legume-rs: Library for Exploring Genomics Using Machine learning Essentials

• This is a command line based tool runs on Unix-like environments.

Installation

0. Install Rust environment, e.g., using rustup

1. Clone this repo

2. Install all binaries to your local executable directory (e.g., ~/.cargo/bin/):

make install

Alternatively, you can install individual binaries:

cargo install --path data-beans # Data Backend for Extraction And Neighbourhood Search
cargo install --path senna      # Stochastic data Embedding with Nearest Neighbourhood Adjustment
cargo install --path pinto      # Proximity-based Interaction Network for Tissue Organization
cargo install --path cocoa      # COunterfactual COnfounder Adjustment
cargo install --path faba       # Feature extraction from Alignment for Base-pair Annotation