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1. GLMPrior GLMPrior Public

   Implementation of a GLM prior for BEAST 2.

   Java 4 1

2. talking-to-lapis talking-to-lapis Public

   Small functions to talk to LAPIS from R and python

   Python

3. sars-cov-2-eu-bdmm-prime sars-cov-2-eu-bdmm-prime Public

   A comprehensive study of the early phylodynamics of SARS-CoV-2 in Europe. Master's Thesis Project in the cEvo group at D-BSSE ETH Zurich. September 2020 to March 2021..

   Python

4. BDMM-Prime BDMM-Prime Public

   Forked from tgvaughan/BDMM-Prime

   Modified implementation of the BDMM multi-type birth-death model for BEAST 2.

   Java

5. snakemake-phylo-beast2 snakemake-phylo-beast2 Public

   Snakemake workflow to run beast2 analysis with genetic sequences

   Python

6. snakemake-sim-beast2 snakemake-sim-beast2 Public

   BEAST2 simulation and inference snakemake workflow with ReMASTER

   Python