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  1. MiCall MiCall Public

    Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C

    Python 19 11

  2. aligntools aligntools Public

    A Python library for manipulation of CIGAR, MSA, and other alignment formats.

    Python 11

  3. Kive Kive Public

    Archival and automation of bioinformatic pipelines and data

    Python 8 1

  4. pyvdrm pyvdrm Public

    Tools for interpreting viral drug resistance mutations

    Python 3 1

  5. MiSeqQCReport MiSeqQCReport Public

    Quality control report for the MiSeq.

    Perl 2 1

  6. make_tree make_tree Public

    Simple script for drawing phylogenetic trees

    Python 2 1

Repositories

Showing 10 of 61 repositories
  • MiCall Public

    Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C

    cfe-lab/MiCall’s past year of commit activity
    Python 19 AGPL-3.0 11 116 2 Updated Feb 2, 2026
  • CFEIntact Public

    A bioinformatics tool for detecting defects in HIV-1 proviral sequences.

    cfe-lab/CFEIntact’s past year of commit activity
    Python 2 MIT 3 8 (1 issue needs help) 0 Updated Feb 2, 2026
  • sds-viewer Public

    Public record of BC CfE Safety Data Sheets (SDS)

    cfe-lab/sds-viewer’s past year of commit activity
    Python 0 0 0 0 Updated Feb 2, 2026
  • miseqinteropreader Public

    Parser for Illumina MiSeq InterOp binary files

    cfe-lab/miseqinteropreader’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 30, 2026
  • pyvdrm Public

    Tools for interpreting viral drug resistance mutations

    cfe-lab/pyvdrm’s past year of commit activity
    Python 3 AGPL-3.0 1 0 0 Updated Jan 29, 2026
  • proviral Public
    cfe-lab/proviral’s past year of commit activity
    Python 0 MIT 2 3 1 Updated Jan 26, 2026
  • hivstats Public

    Various stats about HIV genome, for use in CFEIntact

    cfe-lab/hivstats’s past year of commit activity
    Python 0 AGPL-3.0 0 0 0 Updated Jan 23, 2026
  • codeclub1 Public

    Repository for CFE's first code club session

    cfe-lab/codeclub1’s past year of commit activity
    Python 0 AGPL-3.0 0 0 0 Updated Jan 19, 2026
  • hla_algorithm Public

    Reimplementation of a bblab ruby script in python.

    cfe-lab/hla_algorithm’s past year of commit activity
    Python 0 0 2 0 Updated Jan 9, 2026
  • aligntools Public

    A Python library for manipulation of CIGAR, MSA, and other alignment formats.

    cfe-lab/aligntools’s past year of commit activity
    Python 11 AGPL-3.0 0 1 0 Updated Jan 9, 2026

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