Enhanced GPM-GT integration in application process#112
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@setiadha-unc has indicated that this may be close to ready (with some potential ongoing discussions for rationale for tiers in GCEP application), so I've rebased against main and opened a draft pull request for review. |
bpow
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Jan 9, 2026
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| namespace App\DataTransferObjects; | ||
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| class GtDiseaseDto |
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For safety, DTO classes should probably be final readonly. I'd also be interested into looking into use of a FromArrayTrait or Spatie's DataTransferObject library to see if we can make DTO classes more concisely (not just these, but for others in the codebase as well.
bpow
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Jan 9, 2026
| return [ | ||
| 'ids' => 'required|array|min:1', | ||
| 'ids.*' => 'required|integer|exists:genes,id', | ||
| 'tier' => 'nullable|integer|in:1,2,3,4' |
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Is this correct anymore? I think we had changed to having just 2 tiers.
bpow
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Jan 9, 2026
| return this.genes.reduce((n, g) => { return n + ((this.getTier(g) === 1 && this.isCurated(g)) ? 1 : 0); }, 0); | ||
| }, | ||
| shouldShowRationale() { | ||
| return this.group?.is_gcep && (this.tier1CuratedGenesCount > 0 || this.editing); |
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Double checking the logic here: do we want the rationale to be shown when editing even if there are no tier1 curated genes?
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…include in checkpoint. Fix GPM-GT-Integration
…apshot. GPM-GT-Integration
…PM-GT Integration
…user and super-admin, updated gene -> GDM VCEP step 4 evidence summary. GPM-GT Integration
…or scope and rationale. no DTO. GPM-GT-Epam-Integration
… rename table genes to scope_genes. GPM-GT-Epam-Integration
…PM-GT Integration
…curated gene. GPM-GT Integration
- Replaced gene with GDM at step 4, - Added detail "found in another vcep". GPM-GT Integration
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Related to multiple JIRA issues: https://broadinstitute.atlassian.net/jira/software/projects/GPM/boards/828?selectedIssue=GPM-500 and dependent on https://broadinstitute.atlassian.net/browse/GT-70.