Author: Katja Kozjek (katja.kozjek@nbis.se)
Project: 157 SCREESCO
Repository for 157_SCREESCO project with corresponding directories and file structure.
The intended content of each directory is explained in separate README.md files.
Note that data is not included in Github repo due to size.
project
|- doc/ documentation for the study
|
|- data/ raw and primary data, essentially all input files, never edit!
| |- intermediate/
| |- metaphlan_tables/
| |- oncobiome_database/
| |- randomized_3000FIT/
| |- screesco_samples/
| |- sequencing/
| |- sourmash
| |- stag_results/
|
|- envs/
| |- screesco-env/
|
|- code/ all codes needed to go from input files to final results
|- notebooks/
|
|- intermediate/ output files from different analysis steps, can be deleted
|- logs/ logs from the different analysis steps
|
|- results/ output from workflows and analyses
| |- figures/
| |- reports/
| |- tables/
|
|- test/
|- .gitignore sets which parts of the repository that should be git tracked