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1 change: 1 addition & 0 deletions .ruby-version
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
3.1.6
7 changes: 7 additions & 0 deletions Gemfile
Original file line number Diff line number Diff line change
@@ -1,8 +1,15 @@
source "https://rubygems.org"

# Fix SSL CRL error with OpenSSL 3.6.0: use patched openssl gem (see rubyonmac.dev)
gem "openssl", "~> 3.1.2"

# Unpin ffi: override lockfile’s 1.11.1 so we can use a version that builds on Ruby 3.1+
gem "ffi", ">= 1.15.0"

gem "github-pages", group: :jekyll_plugins

gem "tzinfo-data"
gem "webrick" # Required for `jekyll serve` on Ruby 3.0+ (removed from stdlib)
gem "wdm", "~> 0.1.0" if Gem.win_platform?

# If you have any plugins, put them here!
Expand Down
262 changes: 112 additions & 150 deletions Gemfile.lock
Original file line number Diff line number Diff line change
@@ -1,13 +1,14 @@
GEM
remote: https://rubygems.org/
specs:
activesupport (4.2.11.1)
i18n (~> 0.7)
activesupport (6.0.6.1)
concurrent-ruby (~> 1.0, >= 1.0.2)
i18n (>= 0.7, < 2)
minitest (~> 5.1)
thread_safe (~> 0.3, >= 0.3.4)
tzinfo (~> 1.1)
addressable (2.8.0)
public_suffix (>= 2.0.2, < 5.0)
zeitwerk (~> 2.2, >= 2.2.2)
addressable (2.8.8)
public_suffix (>= 2.0.2, < 8.0)
algolia_html_extractor (2.6.4)
json (~> 2.0)
nokogiri (~> 1.10)
Expand All @@ -31,84 +32,73 @@ GEM
ffi (>= 1.3.0)
eventmachine (1.2.7)
execjs (2.7.0)
faraday (0.17.0)
multipart-post (>= 1.2, < 3)
ffi (1.11.1)
faraday (2.14.1)
faraday-net_http (>= 2.0, < 3.5)
json
logger
faraday-net_http (3.4.2)
net-http (~> 0.5)
ffi (1.17.3)
filesize (0.2.0)
forwardable-extended (2.6.0)
gemoji (3.0.1)
github-pages (201)
activesupport (= 4.2.11.1)
github-pages-health-check (= 1.16.1)
jekyll (= 3.8.5)
jekyll-avatar (= 0.6.0)
github-pages (217)
github-pages-health-check (= 1.17.2)
jekyll (= 3.9.0)
jekyll-avatar (= 0.7.0)
jekyll-coffeescript (= 1.1.1)
jekyll-commonmark-ghpages (= 0.1.6)
jekyll-default-layout (= 0.1.4)
jekyll-feed (= 0.11.0)
jekyll-feed (= 0.15.1)
jekyll-gist (= 1.5.0)
jekyll-github-metadata (= 2.12.1)
jekyll-mentions (= 1.4.1)
jekyll-optional-front-matter (= 0.3.0)
jekyll-github-metadata (= 2.13.0)
jekyll-mentions (= 1.6.0)
jekyll-optional-front-matter (= 0.3.2)
jekyll-paginate (= 1.1.0)
jekyll-readme-index (= 0.2.0)
jekyll-redirect-from (= 0.14.0)
jekyll-relative-links (= 0.6.0)
jekyll-remote-theme (= 0.4.0)
jekyll-readme-index (= 0.3.0)
jekyll-redirect-from (= 0.16.0)
jekyll-relative-links (= 0.6.1)
jekyll-remote-theme (= 0.4.3)
jekyll-sass-converter (= 1.5.2)
jekyll-seo-tag (= 2.5.0)
jekyll-sitemap (= 1.2.0)
jekyll-swiss (= 0.4.0)
jekyll-theme-architect (= 0.1.1)
jekyll-theme-cayman (= 0.1.1)
jekyll-theme-dinky (= 0.1.1)
jekyll-theme-hacker (= 0.1.1)
jekyll-theme-leap-day (= 0.1.1)
jekyll-theme-merlot (= 0.1.1)
jekyll-theme-midnight (= 0.1.1)
jekyll-theme-minimal (= 0.1.1)
jekyll-theme-modernist (= 0.1.1)
jekyll-theme-primer (= 0.5.3)
jekyll-theme-slate (= 0.1.1)
jekyll-theme-tactile (= 0.1.1)
jekyll-theme-time-machine (= 0.1.1)
jekyll-titles-from-headings (= 0.5.1)
jemoji (= 0.10.2)
kramdown (= 1.17.0)
liquid (= 4.0.0)
listen (= 3.1.5)
jekyll-seo-tag (= 2.7.1)
jekyll-sitemap (= 1.4.0)
jekyll-titles-from-headings (= 0.5.3)
jemoji (= 0.12.0)
kramdown (= 2.3.1)
kramdown-parser-gfm (= 1.1.0)
liquid (= 4.0.3)
mercenary (~> 0.3)
minima (= 2.5.0)
minima (= 2.5.1)
nokogiri (>= 1.10.4, < 2.0)
rouge (= 3.11.0)
rouge (= 3.26.0)
terminal-table (~> 1.4)
github-pages-health-check (1.16.1)
github-pages-health-check (1.17.2)
addressable (~> 2.3)
dnsruby (~> 1.60)
octokit (~> 4.0)
public_suffix (~> 3.0)
public_suffix (>= 2.0.2, < 5.0)
typhoeus (~> 1.3)
html-pipeline (2.14.0)
html-pipeline (2.14.3)
activesupport (>= 2)
nokogiri (>= 1.4)
http_parser.rb (0.6.0)
httpclient (2.8.3)
i18n (0.9.5)
concurrent-ruby (~> 1.0)
jekyll (3.8.5)
jekyll (3.9.0)
addressable (~> 2.4)
colorator (~> 1.0)
em-websocket (~> 0.5)
i18n (~> 0.7)
jekyll-sass-converter (~> 1.0)
jekyll-watch (~> 2.0)
kramdown (~> 1.14)
kramdown (>= 1.17, < 3)
liquid (~> 4.0)
mercenary (~> 0.3.3)
pathutil (~> 0.9)
rouge (>= 1.7, < 4)
safe_yaml (~> 1.0)
jekyll-algolia (1.5.0)
jekyll-algolia (1.7.1)
algolia_html_extractor (~> 2.6)
algoliasearch (~> 1.26)
filesize (~> 0.1)
Expand All @@ -117,8 +107,8 @@ GEM
nokogiri (~> 1.6)
progressbar (~> 1.9)
verbal_expressions (~> 0.1.5)
jekyll-avatar (0.6.0)
jekyll (~> 3.0)
jekyll-avatar (0.7.0)
jekyll (>= 3.0, < 5.0)
jekyll-coffeescript (1.1.1)
coffee-script (~> 2.2)
coffee-script-source (~> 1.11.1)
Expand All @@ -131,150 +121,120 @@ GEM
rouge (>= 2.0, < 4.0)
jekyll-default-layout (0.1.4)
jekyll (~> 3.0)
jekyll-feed (0.11.0)
jekyll (~> 3.3)
jekyll-feed (0.15.1)
jekyll (>= 3.7, < 5.0)
jekyll-gist (1.5.0)
octokit (~> 4.2)
jekyll-github-metadata (2.12.1)
jekyll (~> 3.4)
jekyll-github-metadata (2.13.0)
jekyll (>= 3.4, < 5.0)
octokit (~> 4.0, != 4.4.0)
jekyll-include-cache (0.2.0)
jekyll-include-cache (0.2.1)
jekyll (>= 3.7, < 5.0)
jekyll-mentions (1.4.1)
jekyll-mentions (1.6.0)
html-pipeline (~> 2.3)
jekyll (~> 3.0)
jekyll-octicons (9.1.1)
jekyll (~> 3.1)
octicons (= 9.1.1)
jekyll-optional-front-matter (0.3.0)
jekyll (~> 3.0)
jekyll (>= 3.7, < 5.0)
jekyll-octicons (19.8.0)
jekyll (>= 3.6, < 5.0)
octicons (= 19.8.0)
jekyll-optional-front-matter (0.3.2)
jekyll (>= 3.0, < 5.0)
jekyll-paginate (1.1.0)
jekyll-readme-index (0.2.0)
jekyll (~> 3.0)
jekyll-redirect-from (0.14.0)
jekyll (~> 3.3)
jekyll-relative-links (0.6.0)
jekyll (~> 3.3)
jekyll-remote-theme (0.4.0)
jekyll-readme-index (0.3.0)
jekyll (>= 3.0, < 5.0)
jekyll-redirect-from (0.16.0)
jekyll (>= 3.3, < 5.0)
jekyll-relative-links (0.6.1)
jekyll (>= 3.3, < 5.0)
jekyll-remote-theme (0.4.3)
addressable (~> 2.0)
jekyll (~> 3.5)
rubyzip (>= 1.2.1, < 3.0)
jekyll (>= 3.5, < 5.0)
jekyll-sass-converter (>= 1.0, <= 3.0.0, != 2.0.0)
rubyzip (>= 1.3.0, < 3.0)
jekyll-sass-converter (1.5.2)
sass (~> 3.4)
jekyll-seo-tag (2.5.0)
jekyll (~> 3.3)
jekyll-sitemap (1.2.0)
jekyll (~> 3.3)
jekyll-swiss (0.4.0)
jekyll-theme-architect (0.1.1)
jekyll (~> 3.5)
jekyll-seo-tag (~> 2.0)
jekyll-theme-cayman (0.1.1)
jekyll (~> 3.5)
jekyll-seo-tag (~> 2.0)
jekyll-theme-dinky (0.1.1)
jekyll (~> 3.5)
jekyll-seo-tag (~> 2.0)
jekyll-theme-hacker (0.1.1)
jekyll (~> 3.5)
jekyll-seo-tag (~> 2.0)
jekyll-theme-leap-day (0.1.1)
jekyll (~> 3.5)
jekyll-seo-tag (~> 2.0)
jekyll-theme-merlot (0.1.1)
jekyll (~> 3.5)
jekyll-seo-tag (~> 2.0)
jekyll-theme-midnight (0.1.1)
jekyll (~> 3.5)
jekyll-seo-tag (~> 2.0)
jekyll-theme-minimal (0.1.1)
jekyll (~> 3.5)
jekyll-seo-tag (~> 2.0)
jekyll-theme-modernist (0.1.1)
jekyll (~> 3.5)
jekyll-seo-tag (~> 2.0)
jekyll-theme-primer (0.5.3)
jekyll (~> 3.5)
jekyll-github-metadata (~> 2.9)
jekyll-seo-tag (~> 2.0)
jekyll-theme-slate (0.1.1)
jekyll (~> 3.5)
jekyll-seo-tag (~> 2.0)
jekyll-theme-tactile (0.1.1)
jekyll (~> 3.5)
jekyll-seo-tag (~> 2.0)
jekyll-theme-time-machine (0.1.1)
jekyll (~> 3.5)
jekyll-seo-tag (~> 2.0)
jekyll-titles-from-headings (0.5.1)
jekyll (~> 3.3)
jekyll-seo-tag (2.7.1)
jekyll (>= 3.8, < 5.0)
jekyll-sitemap (1.4.0)
jekyll (>= 3.7, < 5.0)
jekyll-titles-from-headings (0.5.3)
jekyll (>= 3.3, < 5.0)
jekyll-watch (2.2.1)
listen (~> 3.0)
jemoji (0.10.2)
jemoji (0.12.0)
gemoji (~> 3.0)
html-pipeline (~> 2.2)
jekyll (~> 3.0)
jekyll (>= 3.0, < 5.0)
json (2.6.1)
kramdown (1.17.0)
liquid (4.0.0)
listen (3.1.5)
rb-fsevent (~> 0.9, >= 0.9.4)
rb-inotify (~> 0.9, >= 0.9.7)
ruby_dep (~> 1.2)
kramdown (2.3.1)
rexml
kramdown-parser-gfm (1.1.0)
kramdown (~> 2.0)
liquid (4.0.3)
listen (3.10.0)
logger
rb-fsevent (~> 0.10, >= 0.10.3)
rb-inotify (~> 0.9, >= 0.9.10)
logger (1.7.0)
mercenary (0.3.6)
mini_portile2 (2.8.5)
minima (2.5.0)
jekyll (~> 3.5)
minima (2.5.1)
jekyll (>= 3.5, < 5.0)
jekyll-feed (~> 0.9)
jekyll-seo-tag (~> 2.1)
minitest (5.14.4)
multipart-post (2.1.1)
nokogiri (1.15.6)
minitest (5.27.0)
net-http (0.9.1)
uri (>= 0.11.1)
nokogiri (1.18.10)
mini_portile2 (~> 2.8.2)
racc (~> 1.4)
octicons (9.1.1)
nokogiri (>= 1.6.3.1)
octokit (4.14.0)
sawyer (~> 0.8.0, >= 0.5.3)
octicons (19.8.0)
octokit (4.25.1)
faraday (>= 1, < 3)
sawyer (~> 0.9)
openssl (3.1.3)
pathutil (0.16.2)
forwardable-extended (~> 2.6)
pkg-config (1.3.9)
progressbar (1.10.1)
public_suffix (3.1.1)
racc (1.7.3)
public_suffix (4.0.7)
racc (1.8.1)
rb-fsevent (0.10.3)
rb-inotify (0.10.0)
rb-inotify (0.11.1)
ffi (~> 1.0)
rouge (3.11.0)
rexml (3.4.4)
rouge (3.26.0)
ruby-enum (0.7.2)
i18n
ruby_dep (1.5.0)
rubyzip (2.0.0)
rubyzip (2.4.1)
safe_yaml (1.0.5)
sass (3.7.4)
sass-listen (~> 4.0.0)
sass-listen (4.0.0)
rb-fsevent (~> 0.9, >= 0.9.4)
rb-inotify (~> 0.9, >= 0.9.7)
sawyer (0.8.2)
sawyer (0.9.3)
addressable (>= 2.3.5)
faraday (> 0.8, < 2.0)
faraday (>= 0.17.3, < 3)
terminal-table (1.8.0)
unicode-display_width (~> 1.1, >= 1.1.1)
thread_safe (0.3.6)
typhoeus (1.3.1)
ethon (>= 0.9.0)
typhoeus (1.5.0)
ethon (>= 0.9.0, < 0.16.0)
tzinfo (1.2.10)
thread_safe (~> 0.1)
tzinfo-data (1.2019.3)
tzinfo-data (1.2025.3)
tzinfo (>= 1.0.0)
unicode-display_width (1.6.0)
unicode-display_width (1.8.0)
uri (1.1.1)
verbal_expressions (0.1.5)
webrick (1.9.2)
zeitwerk (2.6.18)

PLATFORMS
ruby

DEPENDENCIES
ffi (>= 1.15.0)
github-pages
jekyll-algolia
jekyll-feed
Expand All @@ -284,8 +244,10 @@ DEPENDENCIES
jekyll-paginate
jekyll-sitemap
jemoji
openssl (~> 3.1.2)
pkg-config (~> 1.3)
tzinfo-data
webrick

BUNDLED WITH
1.16.1
2.3.27
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Binary file added assets/img/thesis_citation-tree_example.png
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