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Pull requests: dnanexus/dx-toolkit

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Pull requests list

Bump setuptools from 69.0.2 to 78.1.1 in /src/python dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1532 opened Feb 27, 2026 by dependabot bot Loading…
Bump org.apache.logging.log4j:log4j-core from 2.17.1 to 2.25.3 in /src/java dependencies Pull requests that update a dependency file java Pull requests that update Java code
#1531 opened Feb 27, 2026 by dependabot bot Loading…
Relax websocket-client upper bound to include 1.9.0
#1530 opened Feb 26, 2026 by chenrui333 Loading…
[WIP][APPS-3752] dynamic instance type detection
#1527 opened Feb 13, 2026 by truongle1501 Loading…
@truongle1501
TITAN-23_ISR_error
#1523 opened Feb 12, 2026 by aogorodnikov-dna Loading…
Bump pip from 23.3.1 to 26.0 in /src/python dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1519 opened Feb 2, 2026 by dependabot bot Loading…
Bump wheel from 0.42.0 to 0.46.2 in /src/python dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1516 opened Jan 22, 2026 by dependabot bot Loading…
[DEVEX-2597] [Nextflow] Parsing nextflow_schema.json does not support arrays of strings for the 'type' attribute
#1509 opened Nov 25, 2025 by jsitarova-dnanexus • Draft
[DEVEX-2565] NPI app on OCI - return older version of nextflow assets
#1495 opened Sep 29, 2025 by jsitarova-dnanexus Loading…
3
DEVEX-2520 Nextflow Update
#1461 opened Mar 26, 2025 by jsitarova-dnanexus Loading…
Bump mock from 2.0.0 to 5.2.0 in /src/python dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1449 opened Mar 10, 2025 by dependabot bot Loading…
Bump pip from 23.3.1 to 25.0.1 in /src/python dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1437 opened Feb 10, 2025 by dependabot bot Loading…
5
build and publish wheel
#1429 opened Jan 30, 2025 by dimbleby Loading…
Bump xattr from 0.10.1 to 1.1.4 in /src/python dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1424 opened Jan 13, 2025 by dependabot bot Loading…
[APPS-2933] Test nextflow nf-core pipelines on Ubuntu 24.04 AEE
#1413 opened Oct 29, 2024 by jsitarova-dnanexus • Draft
DEVEX-2418 bug python Pull requests that update Python code
#1409 opened Oct 18, 2024 by vkuban-dx Loading…
5
TIP-3821 Update jackson libraries to work well with Spark 3.5.2
#1407 opened Oct 17, 2024 by sushanthdn Loading…
Move __future__ imports to beginning of files
#1377 opened Jun 4, 2024 by giang-nghg Loading…
Bump parameterized from 0.8.1 to 0.9.0 in /src/python dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1302 opened Dec 18, 2023 by dependabot bot Loading…
Bump pexpect from 4.6 to 4.9.0 in /src/python dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1300 opened Dec 18, 2023 by dependabot bot Loading…
PTFM-36293 Fix potentially missing jobs in dx find --tree
#1150 opened Aug 21, 2023 by wormsik Loading…
Bump requests from 2.20.0 to 2.31.0 in /build dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1049 opened May 22, 2023 by dependabot bot Loading…
DEVEX-1916 Build UA on 22.04
#1012 opened Apr 13, 2023 by billagee • Draft
[Snyk] Upgrade commons-codec:commons-codec from 1.10 to 1.15
#937 opened Feb 16, 2023 by keithmccartney-dna Loading…
[Snyk] Upgrade commons-io:commons-io from 2.5 to 2.11.0
#936 opened Feb 16, 2023 by keithmccartney-dna Loading…
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