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Link to Full Publication and Package Install with pacman #22

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9d387c1
adding full publication link
mbergins May 24, 2022
03c48d9
changing install.R to use pacman library for install checks
mbergins May 24, 2022
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5 changes: 3 additions & 2 deletions R/InfoAbout.R
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Original file line number Diff line number Diff line change
Expand Up @@ -81,7 +81,8 @@ div(id="InfoAboutBox",
column(1, style="width:10%",
h4 ("Citation")
),
column(10,
column(10,
h6 ("If you use CORAL in your work, you should cite: ", tags$a(href="http://dx.doi.org/10.1016/j.cels.2018.07.001","Metz & Deoudes, Cell Systems 2018")),
h6 ("Coral was initially described in a preprint by Metz & Deoudes et al available at ",
tags$a(href="https://www.biorxiv.org/content/early/2018/05/25/330274", "bioRxiv",target="_blank")),
h6 ("Coral makes use of phylogenetic information derived from ",
Expand All @@ -93,4 +94,4 @@ div(id="InfoAboutBox",
)
)
)
)
)
39 changes: 22 additions & 17 deletions install.R
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@@ -1,20 +1,25 @@
# install basic libraries
# TODO: use R profile to set mirrors
# install.packages("shiny", repos = "http://cran.us.r-project.org")
# install.packages("shinydashboard", repos = "http://cran.us.r-project.org")
# install.packages("shinyBS", repos = "http://cran.us.r-project.org")
# install.packages("readr", repos = "http://cran.us.r-project.org")
# install.packages("rsvg", repos = "http://cran.us.r-project.org")
# install.packages("shinyWidgets", repos = "http://cran.us.r-project.org")
# install.packages("RColorBrewer", repos = "http://cran.us.r-project.org")
#!/usr/bin/env Rscript

# # install Manning-related libraries
# install.packages("svgPanZoom", repos = "http://cran.us.r-project.org")
# to find all the library commands run:
# grep -Rh library * | sort | uniq
#
# then reformat the library calls to use p_load as below, plus dealing with the github only packages

# # install ui-related libraries
# install.packages("colourpicker", repos = "http://cran.us.r-project.org")
# install.packages("DT", repos = "http://cran.us.r-project.org")
if("pacman" %in% rownames(installed.packages()) == FALSE) {
install.packages("pacman")
}

# # install other network libraries
# install.packages("data.tree", repos = "http://cran.us.r-project.org")
install.packages("jsonlite", repos = "http://cran.us.r-project.org")
library(pacman)

p_load(colourpicker)
p_load(data.tree)
p_load(DT)
p_load(jsonlite)
p_load(RColorBrewer)
p_load(readr)
p_load(rsvg)
p_load(shiny)
p_load(shinyBS)
p_load(shinydashboard)
p_load(shinyWidgets)
p_load(svgPanZoom)