queen-quality

GS and GWAS on queen size and fertility traits

Dylan Ryals, Bradley Metz, Luiz Brito, David Tarpy, Brock Harpur

• The script 1_data_prep.sh is designed for SLURM protocol on an HPC. It filters raw data and performs initial analyses:
  • The pheno directory contains raw phenotypes for queens.
  • The scripts directory contains scripts for cleaning, filtering, and adjusting data.
  • Processed data are output to the data directory.
• The R markdown file 2_analysis.Rmd runs analyses and generates figures, with 2_analysis.html displaying all outputs.
  • Publication figures are output to the fig directory.