[FIX] Update ciftify_clean_img.py to catch use cases without confound_signals#169
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marcelzwiers wants to merge 1 commit intoedickie:masterfrom
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[FIX] Update ciftify_clean_img.py to catch use cases without confound_signals#169marcelzwiers wants to merge 1 commit intoedickie:masterfrom
marcelzwiers wants to merge 1 commit intoedickie:masterfrom
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If confounds are not given then an error occurs. The PR is a minimal patch for this
Traceback (most recent call last):
File "/home/mrphys/marzwi/.conda/envs/ciftify/bin/ciftify_clean_img", line 8, in <module>
sys.exit(main())
File "/home/mrphys/marzwi/.conda/envs/ciftify/lib/python3.9/site-packages/ciftify/bin/ciftify_clean_img.py", line 376, in main
ret = run_ciftify_clean_img(arguments, tmpdir)
File "/home/mrphys/marzwi/.conda/envs/ciftify/lib/python3.9/site-packages/ciftify/bin/ciftify_clean_img.py", line 254, in run_ciftify_clean_img
clean_output = clean_image_with_nilearn(trimmed_nifti, confound_signals, settings)
File "/home/mrphys/marzwi/.conda/envs/ciftify/lib/python3.9/site-packages/ciftify/bin/ciftify_clean_img.py", line 345, in clean_image_with_nilearn
confounds=confound_signals.values,
AttributeError: 'NoneType' object has no attribute 'values'
marcelzwiers
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If confounds are not given then an error occurs. The PR is a minimal patch for this