Version v0.12.1

Features

[#195] Handle NA insert sizes in extract_fragment_size rule.
[#196] New rules for generating subsets of bigWig files.

Improvements & Fixes

[#197] Conda environment updates: to more recent versions of MultiQC, cutadapt, bowtie2 and Picard, and [#199] click library pinned to version 8.2.1 to avoid issues with version 8.2.2 or until further investigation.
[#198] Improvements in the reports: better sizing of scaling plots on large runs and added scaling values to the stats tables.

Version v0.10.0

Features

[#194] Rule no_scaling performs a short run gathering QC metrics and generating only unscaled bigWig files.

Improvements & fixes

[#191] Better reports: Failed barcodes still make it to the final report, final figures layout has been also improved. Barcode sequence now carried to final stats_summary.txt file.
[#193] Better validation of user input and better handling of errors for invalid user input. More verbose and structured help text, including most relevant target rules.

Version v0.9.0

This version features #189: a customizable genome alignment step using either bowtie2 (default) or strobealign.