Microbial_MetaOmics

This repository contains the practical workshop for Hands-on Bioinformatics for Microbial Meta-omics (ENV-621) at EPFL 2023/24.

Course Overview

• 00_Requirements

Week 1 (11th - 15th December)

Amplicon data analysis

• 16S rRNA gene amplicon analysis

Metagenomics

• 01_Read_QC
• 02_Assembly
• 03_Mapping
• 04_Binning
• 05_Taxonomic_Annotation
• End_of_Week1

Week 2 (29th - 2nd February)

Metagenomics continued

• 05_Functional_Annotation
• 06_Representative_MAGs

Metatranscriptomics, metaproteomics, and data visualisation

• 07_Metatranscriptomics_and_Metaproteomics
• 08_Data_visualisation