Model import

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jo edited this page May 22, 2019 · 2 revisions

matlab

import of matlab cobra models is possible in bacarena
tutorial

readMATmod("cobra-model.mat")

SBML

sybilSBML is needed for SBML input
currently sybilSBML is not available on CRAN because the CRAN test servers do not have the latest version of libsbml yet
manual installation of sybilSBML (for linux):

wget https://www.cs.hhu.de/fileadmin/redaktion/Oeffentliche_Medien/Fakultaeten/Mathematisch-Naturwissenschaftliche_Fakultaet/Informatik/Bioinformatik/sybilSBML_3.0.5.tar.gz
R CMD INSTALL  sybilSBML_3.0.5.tar.gz