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  • Joined Mar 8, 2026

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exopoiesis/README.md

Exopoiesis Research

Designing self-maintaining inorganic systems at the boundary between chemistry and biology.

We study whether iron sulfide minerals — the same materials found at deep-sea hydrothermal vents — can be engineered into a minimal system that maintains itself without being alive.

Current work

Project Description Status
digital-twin ORACLE pipeline: Sobol/Gillespie + FNO/PINN surrogate for protocell viability Active
sulfide-proton-barriers NEB/MD calculations of H⁺ diffusion in iron sulfides Preliminary results
exopoiesis.space Project website Live

Key results so far

  • Pentlandite blocks protons: E_a = 1.43 eV (MACE-MP-0 NEB, 2×2×2 supercell)
  • Mackinawite conducts protons in-plane: E_a = 0.44 eV — 10¹⁷× anisotropy
  • Bilayer membrane architecture enables spontaneous electrochemistry at ΔpH ≥ 2.3

Methods & tools

Python · ASE · MACE-MP-0 · GPAW · Gillespie SSA · CI-NEB · Molecular Dynamics · FNO · PINN · PyTorch

About

Independent researcher, Ukraine. Background in computer hardware engineering. This project is developed through human–AI collaboration using Claude (Anthropic).

📧 igor@exopoiesis.space · 🌐 exopoiesis.space

Popular repositories Loading

  1. sulfide-proton-barriers sulfide-proton-barriers Public

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  2. exopoiesis.github.io exopoiesis.github.io Public

    Self-maintaining inorganic systems — between living and nonliving

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  3. exopoiesis exopoiesis Public

  4. digital-twin digital-twin Public

    Digital-twin toolkit for mineral protocell design: sensitivity analysis, Gillespie–PDE surrogates, and robustness mapping

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  5. autoadsorbate autoadsorbate Public

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    Chemical intuition for surface science in a package.

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  6. yt-slide-mark yt-slide-mark Public

    Extract slides from YouTube presentations and pair them with transcript text in MD format.

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