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Bump the python-minor-and-patch group across 1 directory with 13 updates - #18

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Bumps the python-minor-and-patch group with 12 updates in the / directory:

Package From To
numpy 2.3.5 2.5.1
scipy 1.16.3 1.18.0
scikit-learn 1.7.2 1.9.0
matplotlib 3.10.7 3.11.1
furo 2025.9.25 2025.12.19
sphinx-autodoc-typehints 3.5.2 3.12.1
pytest 9.0.3 9.1.1
pytest-cov 7.0.0 7.1.0
ruff 0.14.6 0.15.22
pyright 1.1.407 1.1.411
pydoclint 0.8.3 0.9.1
pre-commit 4.5.0 4.6.0

Updates numpy from 2.3.5 to 2.5.1

Release notes

Sourced from numpy's releases.

v2.5.1 (July 4, 2026)

NumPy 2.5.1 Release Notes

The NumPy 2.5.1 is a patch release that fixes bugs discovered after the 2.5.0 release. The most noticeable is the fix is to the numpy datetime cython API which should allow downstream to support NumPy versions older than 2.5. Preparation for Python 3.15 continues along with typing improvements.

This release supports Python versions 3.12-3.14

Changes

  • The minimum supported GCC version has been updated from 9.3.0 to 10.3.0

    (gh-31843)

Contributors

A total of 10 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Adhyan Gupta +
  • Ankit Ahlawat
  • Charles Harris
  • Iason Krommydas
  • Joren Hammudoglu
  • Kumar Aditya
  • Nathan Goldbaum
  • Sebastian Berg
  • Ties Jan Hefting +
  • Vineet Kumar

Pull requests merged

A total of 20 pull requests were merged for this release.

  • #31707: MAINT: Prepare 2.5.x for further development
  • #31721: CI: fix new cython-lint errors (#31711)
  • #31723: MAINT: Update meson to match main
  • #31729: TST: use setup-sde instead of curl to get SDE binaries (#31727)
  • #31829: BUG: Relax finfo to be easier accessible for all user dtypes...
  • #31831: TYP: Fix flatiter.__next__ return type for object_ and...
  • #31832: BUG: avoid deadlocks using NpyString API (#31682)
  • #31833: BUG: fix out array leak in reduceat and accumulate when dtype...
  • #31835: BUG: fix numpy datetime cython APIs to be compatible with older...
  • #31836: TYP: Fix incorrect dtype inference of asarray([]) (#31732)
  • #31837: TYP: Fix np.ma.masked_array 2.5.0 regression
  • #31838: FIX: Refactor error handling in array_setstate to prevent typecode...
  • #31839: TST: xfail multithreaded BLAS test more generously
  • #31840: MAINT: Rename subroutine for crackfortran tests

... (truncated)

Changelog

Sourced from numpy's changelog.

This is a walkthrough of the NumPy 2.4.0 release on Linux, which will be the first feature release using the numpy/numpy-release <https://github.com/numpy/numpy-release>__ repository.

The commands can be copied into the command line, but be sure to replace 2.4.0 with the correct version. This should be read together with the :ref:general release guide <prepare_release>.

Facility preparation

Before beginning to make a release, use the requirements/*_requirements.txt files to ensure that you have the needed software. Most software can be installed with pip, but some will require apt-get, dnf, or whatever your system uses for software. You will also need a GitHub personal access token (PAT) to push the documentation. There are a few ways to streamline things:

  • Git can be set up to use a keyring to store your GitHub personal access token. Search online for the details.

Prior to release

Add/drop Python versions

When adding or dropping Python versions, multiple config and CI files need to be edited in addition to changing the minimum version in pyproject.toml. Make these changes in an ordinary PR against main and backport if necessary. We currently release wheels for new Python versions after the first Python RC once manylinux and cibuildwheel support that new Python version.

Backport pull requests

Changes that have been marked for this release must be backported to the maintenance/2.4.x branch.

Update 2.4.0 milestones

Look at the issues/prs with 2.4.0 milestones and either push them off to a later version, or maybe remove the milestone. You may need to add a milestone.

Check the numpy-release repo

... (truncated)

Commits
  • 5e1d03f Merge pull request #31863 from charris/prepare-2.5.1
  • ad0b66b REL: Prepare for the NumPy 2.5.1 release.
  • 9df8516 Merge pull request #31858 from charris/backport-31688
  • 4dee265 Merge pull request #31857 from charris/backport-31775
  • dc8d553 Merge pull request #31856 from charris/backport-31846
  • 67cb4a8 fix:Signed integer overflow in datetime.c (#31688)
  • baa2589 TST: Clean up imports, formatting, and assertions
  • 2fe5ba4 TEST: Refactor tests to use np.testing.assert_raises_regex per review
  • bb46581 MAINT: Remove deprecated Python recursion fix
  • 8f34214 MAINT: Move SeedSequence recursion guard to C-layer and add tests
  • Additional commits viewable in compare view

Updates scipy from 1.16.3 to 1.18.0

Release notes

Sourced from scipy's releases.

SciPy 1.18.0 Release Notes

SciPy 1.18.0 is the culmination of 6 months of hard work. It contains many new features, numerous bug-fixes, improved test coverage and better documentation. There have been a number of deprecations and API changes in this release, which are documented below. All users are encouraged to upgrade to this release, as there are a large number of bug-fixes and optimizations. Before upgrading, we recommend that users check that their own code does not use deprecated SciPy functionality (to do so, run your code with python -Wd and check for DeprecationWarning s). Our development attention will now shift to bug-fix releases on the 1.18.x branch, and on adding new features on the main branch.

This release requires Python 3.12-3.14 and NumPy 2.0.0 or greater.

Highlights of this release

  • SciPy now supports three different build modes for BLAS and LAPACK LP64/ILP64 support, and machinery is provided for downstream cython_lapack consumers to gracefully handle LP64/ILP64 backend builds. ILP64 support has been substantially improved across the SciPy library.
  • Remaining Fortran to C translations have been completed---an experimental Fortran-free build option is now available to developers for testing purposes. Developer feedback is welcome on Fortran-free builds.
  • scipy.signal.whittaker_henderson now provides access to Whittaker-Henderson smoothing of a discrete signal.
  • A large number of scipy.stats functions now support lazy arrays and JAX JIT. Array API support has been improved substantially in SciPy, with at least 21 functions gaining new support in this release. 16 scipy.stats functions have also gained support for MArray input.

New features

scipy.fft improvements

  • SciPy's internal FFT backend has switched from pocketfft to its successor package ducc0.fft, which features several incremental improvements. The most significant of those from SciPy's perspective is probably that storage requirements for internally cached plans have been significantly reduced for most long 1D transforms. Plans that require more storage than 1MB will no longer be cached; this mainly affects huge 1D transforms of prime and near-prime sizes.

scipy.interpolate improvements

... (truncated)

Commits
  • 54ef542 REL: 1.18.0 release commit
  • a45e463 Merge pull request #25395 from tylerjereddy/treddy_prep_1.18.0_final
  • ee2442e TYP, MAINT, TST: PR 25395 revisions
  • 3225154 DOC: PR 25395 revisions
  • 14c7bd7 TYP: Fix mypy errors with pytest==9.1.0 (#25410)
  • 71522e9 DOC: revise SciPy 1.18.0 release notes
  • 92f8482 MAINT: fix errors from pytest 9.1 (#25378)
  • 7b27bf4 TST, MAINT: modernize spatial tests for pytest 10 (#25376)
  • d05b640 Merge pull request #25347 from tylerjereddy/treddy_version_bump_1.18.0rc3
  • e60fe8b REL: set to 1.18.0rc3 unreleased
  • Additional commits viewable in compare view

Updates scikit-learn from 1.7.2 to 1.9.0

Release notes

Sourced from scikit-learn's releases.

Scikit-learn 1.9.0

We're happy to announce the 1.9.0 release.

You can read the release highlights under https://scikit-learn.org/stable/auto_examples/release_highlights/plot_release_highlights_1_9_0.html and the long version of the change log under https://scikit-learn.org/stable/whats_new/v1.9.html

This release adds narwhals as a new dependency that will help to improve dataframe interoperability across the project.

This version supports Python versions 3.11 to 3.14.

You can upgrade with pip as usual:

pip install -U scikit-learn

The conda-forge builds can be installed using:

conda install -c conda-forge scikit-learn

Release 1.8.0

We're happy to announce the 1.8.0 release.

You can read the release highlights under https://scikit-learn.org/stable/auto_examples/release_highlights/plot_release_highlights_1_8_0.html and the long version of the change log under https://scikit-learn.org/stable/whats_new/v1.8.html

This version supports Python versions 3.11 to 3.14 and features support of free-threaded CPython.

You can upgrade with pip as usual:

pip install -U scikit-learn

The conda-forge builds can be installed using:

conda install -c conda-forge scikit-learn
Commits
  • 77def0e trigger wheel builder [cd build]
  • ee7c0b0 generate changelog
  • 3d7fb04 bump version
  • 8954e7b DOC Release highlights for 1.9 (#34147)
  • 73a3eab Fix: Array-API - avoid failing for numpy fit + predict with sparse or array-l...
  • 8839aae DOC Thread-safety requirement for open_listener message consumer callback (#3...
  • 4d2476a DOC Refactor array API docs page (#34054)
  • f9f812f 🔒 🤖 CI Update lock files for scipy-dev CI build(s) 🔒 🤖 ...
  • d779dc3 🔒 🤖 CI Update lock files for free-threaded CI build(s) 🔒 :rob...
  • 6a03cf0 🔒 🤖 CI Update lock files for array-api CI build(s) 🔒 🤖 ...
  • Additional commits viewable in compare view

Updates matplotlib from 3.10.7 to 3.11.1

Release notes

Sourced from matplotlib's releases.

REL: v3.11.1

This is the first bugfix release of the 3.11.x series.

This release contains several bug-fixes and adjustments:

  • Fix tight layout of multiple subplots with sharey=True
  • Fix NoNorm cursor formatting for uint8 images
  • Fix occasional misalignment in reported mouse position (also fix a bug with canvas height)
  • Fix clipped Axis labels on 3D plots with tight layout
  • Fix inverted Axis on 3D plots
  • Fix restoring 'auto' aspect in 3D axes after switching from 'equal'
  • Fix missing glyphs when subsetting Type 1 fonts in PDF
  • Fix oversized embedding of Type 42 fonts in PDF/PostScript files

As well as several documentation and typing improvements and corrections.

REL: v3.11.0

The largest change within this release is a complete overhaul of text and font processing. Through the use of libraqm, HarfBuzz, SheenBidi, and an updated release of FreeType, all text should now support modern font features, enabling full internationalization in all languages. Not all features of these libraries are supported yet, but we expect this work to enable further improvements in an easier manner.

Outside of text handling, there are several improvements to 3D Axes, performance, new accessible colour sequences, flexible figure management, and more. See the release notes for more information.

REL: v3.11.0rc2

This is the second release candidate for the meso release 3.11.0.

This release candidate fixes some problems with downstream packages, removes some missed deprecations, and corrects some additional minor bugs.

REL: v3.11.0rc1

After an extended development stretch, we are pleased to announce the first release candidate of Matplotlib 3.11.0.

The largest change within this release is a complete overhaul of text and font processing. Through the use of libraqm, HarfBuzz, SheenBidi, and an updated release of FreeType, all text should now support modern font features, enabling full internationalization in all languages. Not all features of these libraries are supported yet, but we expect this work to enable further improvements in an easier manner. Due to the update to the font rendering stack, we cannot guarantee that text will be bit-for-bit perfect with previous releases, so if you are using Matplotlib for testing, it may be necessary to introduce/raise a tolerance within your tests.

Outside of text handling, there are several improvements to 3D Axes, performance, new accessible colour sequences, flexible figure management, and more. Final release notes are still being curated, but you may browse the list of new features, API changes, and all issues/pull requests on the milestone.

As a note for downstream packagers, the font libraries have only been tested against the versions bundled with the wheels. It may be possible to expand the range of requirements, or that a requirement is too broad. Please report any issues you have building against external dependencies.

v3.10.9

This is a micro release of the v3.10.x series. Highlights of this release include:

  • Various minor bug and doc fixes
  • Security hardening validation of cyclers - Removing eval usage
  • Security hardening in Latex and PS calls - Removing shell escapes

REL: v3.10.8

This is a bugfix release in the 3.10.x series.

The primary highlights of this release are:

  • Properly allow freethreaded mode in the MacOS backend

... (truncated)

Commits
  • 3c1757a REL: v3.11.1
  • 792c6b5 DOC: Prepare for 3.11.1
  • aaff9f6 Merge branch 'v3.11.0-doc' into v3.11.x
  • d4f4527 Merge pull request #32052 from meeseeksmachine/auto-backport-of-pr-32038-on-v...
  • 6ad4bcf Merge pull request #32050 from meeseeksmachine/auto-backport-of-pr-31304-on-v...
  • 7fb74d3 Merge pull request #32051 from meeseeksmachine/auto-backport-of-pr-32037-on-v...
  • c624aec Backport PR #32038: Fix occasional misalignment in reported mouse position (a...
  • 8eda2b7 Backport PR #32037: Bump the actions group with 3 updates
  • a0e7ae5 Backport PR #31304: Fix restoring 'auto' aspect in 3D axes after switching fr...
  • 9001323 Merge pull request #32047 from meeseeksmachine/auto-backport-of-pr-32025-on-v...
  • Additional commits viewable in compare view

Updates furo from 2025.9.25 to 2025.12.19

Release notes

Sourced from furo's releases.

2025.12.19

  • Bump the supported Sphinx version range

Full Changelog: pradyunsg/furo@2025.09.25...2025.12.19

Changelog

Sourced from furo's changelog.

2025.12.19 -- Harmonious Honeydew

  • ✨ Add support for Sphinx 9.
  • Drop support for Sphinx 6.

2025.09.25 -- Gleaming Green

  • Change the dark mode code back to native.

2025.07.19 -- Frozen Flame

  • ✨ Switch to accessible-pygments themes
  • ✨ Prefetch the sidebar logos
  • ✨ Fix flickering header drop shadow on Safari
  • Add rel=edit attribute to "Edit this page" link/icon
  • Bump NodeJS and npm dependency versions
  • Bump Saas & Webpack major versions
  • Improve current page detection to be resilient to sticky elements above header
  • Modernise Sass and use @use + @forward
  • Remove top of code border-radius with captions
  • Remove "debug printf" for headerTop value
  • Use distinct images for light and dark mode in the documentation
  • Use the modern Saas Modules

2024.08.06 -- Energetic Eminence

  • ✨ Add support for Sphinx 8
  • ✨ Add smoother transitions between breakpoints
  • Increase specificity of table-wrapper selector
  • Avoid page breaks inside paragraphs

2024.07.18 -- Dull Denim

  • Improve how icons are handled and aligned.
  • Improve scroll event handler.
  • Hide the copybutton by default.
  • Fix source_view_link configuration handling.
  • Fix close tag on pencil icon.

2024.05.06 -- Cheerful Cerulean

  • ✨ Add new custom icons for auto mode, reflecting the currently active theme.
  • ✨ Add a view this page button.
  • ✨ Add colours and highlighting to "version modified" API helpers.
  • ✨ Add release information to various customisation knobs.
  • Make all icons bigger and use a thinner stroke with them.

2024.04.27 -- Bold Burgundy

  • Add a skip to content link.

... (truncated)

Commits

Updates sphinx-autodoc-typehints from 3.5.2 to 3.12.1

Release notes

Sourced from sphinx-autodoc-typehints's releases.

3.11.1

What's Changed

Full Changelog: tox-dev/sphinx-autodoc-typehints@3.12.1...3.11.1

3.11.0

What's Changed

Full Changelog: tox-dev/sphinx-autodoc-typehints@3.10.6...3.11.0

3.10.6

What's Changed

Full Changelog: tox-dev/sphinx-autodoc-typehints@3.10.5...3.10.6

3.10.5

What's Changed

New Contributors

Full Changelog: tox-dev/sphinx-autodoc-typehints@3.10.4...3.10.5

3.10.4

What's Changed

Full Changelog: tox-dev/sphinx-autodoc-typehints@3.10.3...3.10.4

... (truncated)

Commits
  • f5734ac 🐛 fix(annotations): resolve cross-module recursive alias (#724)
  • 684cba5 [pre-commit.ci] pre-commit autoupdate (#722)
  • 5a1ae66 🐛 fix(annotations): render recursive type aliases (#721)
  • ae073b6 build(deps): bump actions/checkout from 6.0.3 to 7.0.0 (#719)
  • cee55dd [pre-commit.ci] pre-commit autoupdate (#718)
  • 882b9e7 [pre-commit.ci] pre-commit autoupdate (#717)
  • ae8dd3b ✨ feat(resolver): type C data descriptors from stub files (#716)
  • 6bd0f19 🐛 fix(resolver): survive PEP 649 lazy annotation evaluation errors (#713)
  • 7a9f674 ♻️ refactor(tests): fold per-issue test files into topical ones (#715)
  • a03875e 🐛 fix(docstring): keep types on params with a trailing underscore (#714)
  • Additional commits viewable in compare view

Updates myst-parser from 4.0.1 to 5.1.0

Release notes

Sourced from myst-parser's releases.

v5.1.0

✨ New Features

👌 Improvements

  • 👌 Update myst_gfm_only mode to use the unified gfm_plugin, which now includes GFM autolinks, alerts, and improved strikethrough/tasklist handling by @​chrisjsewell in #1128
  • 👌 Improve MathJax 4 compatibility for Sphinx 9 by @​chrisjsewell in #1110
  • 👌 Stop directive-option parsing at colon fences, fixing nested colon fence directives by @​chrisjsewell in #1133

🐛 Bug Fixes

⬆️ Dependency Upgrades

New Contributors

Full Changelog: executablebooks/MyST-Parser@v5.0.0...v5.1.0

v5.0.0

MyST-Parser 5.0.0

Release Date: 2026-01-15

This release significantly bumps the supported versions of core dependencies:

‼️ Breaking Changes

This release updates the minimum supported versions:

  • Python: >=3.11 (dropped Python 3.10, tests up to 3.14)
  • Sphinx: >=8,<10 (dropped Sphinx 7, added Sphinx 9)
  • Docutils: >=0.20,<0.23 (dropped docutils 0.19, added docutils 0.22)
  • markdown-it-py: ~=4.0 (upgraded from v3)

... (truncated)

Changelog

Sourced from myst-parser's changelog.

5.1.0 - 2026-05-13

✨ New Features

  • ✨ Add "alert" syntax extension for GFM alerts (e.g. > [!NOTE]), see by gh-user:chrisjsewell in gh-pr:1128
  • ✨ Add "gfm_autolink" syntax extension for GFM autolinks, see by gh-user:chrisjsewell in gh-pr:1128
  • ✨ Add myst_strikethrough_single_tilde config option to allow single tilde (~) for strikethrough by gh-user:chrisjsewell in gh-pr:1128
  • ✨ Add myst_colon_fence_exact_match config option to require the closing colon fence to have exactly the same number of colons as the opening, see by gh-user:chrisjsewell in gh-pr:1128

👌 Improvements

  • 👌 Update myst_gfm_only mode to use the unified gfm_plugin, which now includes GFM autolinks, alerts, and improved strikethrough/tasklist handling by gh-user:chrisjsewell in gh-pr:1128
  • 👌 Improve MathJax 4 compatibility for Sphinx 9 by gh-user:chrisjsewell in gh-pr:1110
  • 👌 Stop directive-option parsing at colon fences, fixing nested colon fence directives by gh-user:chrisjsewell in gh-pr:1133

🐛 Bug Fixes

  • 🐛 Use docname instead of source path in warning locations by gh-user:chrisjsewell in gh-pr:1114
  • 🐛 Correctly encode & in Markdown URLs by not HTML-escaping refuri by gh-user:chrisjsewell in gh-pr:1126
  • 🐛 Fix RemovedInSphinx10Warning for inventory item iteration by gh-user:chrisjsewell in gh-pr:1129
  • 🐛 Pin mdit-py-plugins>=0.6.1 for nested field list fix by gh-user:chrisjsewell in gh-pr:1134

⬆️ Dependency Upgrades

  • ⬆️ Upgrade to markdown-it-py~=4.2 and mdit-py-plugins~=0.6 by gh-user:chrisjsewell in gh-pr:1128
  • ⬆️ Update pygments requirement from <2.20 to <2.21 by gh-user:chrisjsewell in gh-pr:1117

Full Changelog: v5.0.0...v5.1.0

5.0.0 - 2026-01-15

This release significantly bumps the supported versions of core dependencies:

‼️ Breaking Changes

This release updates the minimum supported versions:

  • Python: >=3.11 (dropped Python 3.10, tests up to 3.14)
  • Sphinx: >=8,<10 (dropped Sphinx 7, added Sphinx 9)
  • Docutils: >=0.20,<0.23 (dropped docutils 0.19, added docutils 0.22)
  • markdown-it-py: ~=4.0 (upgraded from v3)

⬆️ Dependency Upgrades

  • ⬆️ Upgrade to markdown-it-py v4 by gh-user:chrisjsewell in gh-pr:1060
  • ⬆️ Drop Python 3.10 and Sphinx 7 by gh-user:chrisjsewell in gh-pr:1059
  • ⬆️ Drop docutils 0.19 by gh-user:chrisjsewell in gh-pr:1061
  • ⬆️ Add support for Python 3.14 by gh-user:chrisjsewell in gh-pr:1075
  • ⬆️ Support Sphinx v9 by gh-user:chrisjsewell in gh-pr:1076
  • ⬆️ Allow docutils 0.22 by gh-user:chrisjsewell in gh-pr:1084

... (truncated)

Commits
  • 2871eb9 🚀 Release v5.1.0 (#1135)
  • cc5db37 🐛 FIX: Pin mdit-py-plugins>=0.6.1 for nested field list fix (#1134)
  • 4ce57f9 👌 Stop directive-option parsing at colon fences (#1133)
  • cfcc327 ⬆️ Bump mypy from 2.0.0 to 2.1.0 (#1131)
  • 691738c ⬆️ Bump ruff from 0.15.10 to 0.15.12 (#1132)
  • 0fb1ae9 👌 IMPROVE: MathJax 4 compatibility (Sphinx 9) (#1110)
  • f153b4b ⬆️ Bump actions/setup-python from 5 to 6 (#1092)
  • 93acf8d [pre-commit.ci] pre-commit autoupdate (#1095)
  • a5f1d69 ⬆️ Update pygments requirement from <2.20 to <2.21 (#1117)
  • 8381296 🐛 FIX: Use docname instead of source path in warning locations (#1114)
  • Additional commits viewable in compare view

Updates pytest from 9.0.3 to 9.1.1

Release notes

Sourced from pytest's releases.

9.1.1

pytest 9.1.1 (2026-06-19)

Bug fixes

  • #14220: Fixed a logic bug in pytest.RaisesGroup which would might cause it to display incorrect "It matches FooError() which was paired with BarError" messages.
  • #14591: Fixed a regression in pytest 9.1.0 which caused overriding a parametrized fixture with an indirect @​pytest.mark.parametrize to fail with "duplicate parametrization of '<fixture name>'".
  • #14606: Fixed list-item typing errors from mypy in @pytest.mark.parametrize <pytest.mark.parametrize ref> argvalues parameter.
  • #14608: Fixed a regression in pytest 9.1.0 where conftest.py files located in <invocation dir>/test* were no longer loaded as initial conftests when invoked without arguments. This could cause certain hooks (like pytest_addoption) in these files to not fire.

9.1.0

pytest 9.1.0 (2026-06-13)

Removals and backward incompatible breaking changes

  • #14533: When using --doctest-modules, autouse fixtures with module, package or session scope that are defined inline in Python test modules (not plugins or conftests) will now possibly execute twice.

    If this is undesirable, move the fixture definition to a conftest.py file if possible.

    Technical explanation for those interested: When using --doctest-modules, pytest possibly collects Python modules twice, once as pytest.Module and once as a DoctestModule (depending on the configuration). Due to improvements in pytest's fixture implementation, if e.g. the DoctestModule collects a fixture, it is now visible to it only, and not to the Module. This means that both need to register the fixtures independently.

Deprecations (removal in next major release)

  • #10819: Added a deprecation warning for class-scoped fixtures defined as instance methods (without @classmethod). Such fixtures set attributes on a different instance than the test methods use, leading to unexpected behavior. Use @classmethod decorator instead -- by yastcher.

    See 10819 and 14011.

  • #12882: Calling request.getfixturevalue() <pytest.FixtureRequest.getfixturevalue> during teardown to request a fixture that was not already requested is now deprecated and will become an error in pytest 10.

    See dynamic-fixture-request-during-teardown for details.

  • #13409: Using non-~collections.abc.Collection iterables (such as generators, iterators, or custom iterable objects) for the argvalues parameter in @pytest.mark.parametrize <pytest.mark.parametrize ref> and metafunc.parametrize <pytest.Metafunc.parametrize> is now deprecated.

    These iterables get exhausted after the first iteration, leading to tests getting unexpectedly skipped in cases such as running pytest.main() multiple times, using class-level parametrize decorators, or collecting tests multiple times.

    See parametrize-iterators for details and suggestions.

  • #13946: The private config.inicfg attribute is now deprecated. Use config.getini() <pytest.Config.getini> to access configuration values instead.

    See config-inicfg for more details.

  • #14004: Passing baseid to ~pytest.FixtureDef or nodeid strings to fixture registration APIs is now deprecated. These are internal pytest APIs that are used by some plugins.

... (truncated)

Commits
  • cf470ec Prepare release version 9.1.1
  • e0c8ce6 Merge pull request #14625 from pytest-dev/patchback/backports/9.1.x/a07c31a97...
  • 1b82d16 Merge pull request #14624 from pytest-dev/patchback/backports/9.1.x/b375b79ec...
  • 501c4bc Merge pull request #14596 from bluetech/doc-classmethod
  • b61f588 Merge pull request #14622 from chrisburr/fix-14608-initial-conftest-test-subdir
  • 9a567e0 [automated] Update plugin list (#14617) (#14618)
  • ef8b299 Merge pull request #14620 from pytest-dev/patchback/backports/9.1.x/680f9f3ed...
  • 66abd07 Merge pull request #14220 from bysiber/fix-stale-iexp-raisesgroup
  • 79fbf93 Merge pull request #14612 from pytest-dev/patchback/backports/9.1.x/974ed48b6...
  • 0d312eb Merge pull request #14611 from bluetech/parametrize-argvalues-typing
  • Additional commits viewable in compare view

Updates pytest-cov from 7.0.0 to 7.1.0

Changelog

Sourced from pytest-cov's changelog.

7.1.0 (2026-03-21)

  • Fixed total coverage computation to always be consistent, regardless of reporting settings. Previously some reports could produce different total counts, and consequently can make --cov-fail-under behave different depending on reporting options. See [#641](https://github.com/pytest-dev/pytest-cov/issues/641) <https://github.com/pytest-dev/pytest-cov/issues/641>_.

  • Improve handling of ResourceWarning from sqlite3.

    The plugin adds warning filter for sqlite3 ResourceWarning unclosed database (since 6.2.0). It checks if there is already existing plugin for this message by comparing filter regular expression. When filter is specified on command line the message is escaped and does not match an expected message. A check for an escaped regular expression is added to handle this case.

    With this fix one can suppress ResourceWarning from sqlite3 from command line::

    pytest -W "ignore:unclosed database in <sqlite3.Connection object at:ResourceWarning" ...

  • Various improvements to documentation. Contributed by Art Pelling in [#718](https://github.com/pytest-dev/pytest-cov/issues/718) <https://github.com/pytest-dev/pytest-cov/pull/718>_ and "vivodi" in [#738](https://github.com/pytest-dev/pytest-cov/issues/738) <https://github.com/pytest-dev/pytest-cov/pull/738>. Also closed [#736](https://github.com/pytest-dev/pytest-cov/issues/736) <https://github.com/pytest-dev/pytest-cov/issues/736>.

  • Fixed some assertions in tests. Contributed by in Markéta Machová in [#722](https://github.com/pytest-dev/pytest-cov/issues/722) <https://github.com/pytest-dev/pytest-cov/pull/722>_.

  • Removed unnecessary coverage configuration copying (meant as a backup because reporting commands had configuration side-effects before coverage 5.0).

Commits
  • 66c8a52 Bump version: 7.0.0 → 7.1.0
  • f707662 Make the examples use pypy 3.11.
  • 6049a78 Make context test use the old ctracer (seems the new sysmon tracer behaves di...
  • 8ebf20b Update changelog.
  • 861d30e Remove the backup context manager - shouldn't be needed since coverage 5.0, ...
  • fd4c956 Pass the precision on the nulled total (seems that there's some caching goion...
  • 78c9c4e Only run the 3.9 on older deps.
  • 4849a92 Punctuation.
  • 197c35e Update changelog and hopefully I don't forget to publish release again :))
  • 14dc1c9 Update examples to use 3.11 and make the adhoc layout example look a bit more...
  • Additional commits viewable in compare view

Updates ruff from 0.14.6 to 0.15.22

Release notes

Sourced from ruff's releases.

0.15.22

Release Notes

Released on 2026-07-16.

Preview features

  • [pycodestyle] Add an autofix for E402 (#22212)
  • [refurb] Allow subclassing builtins in stub files (FURB189) (#26812)
  • [ruff] Add rule to replace noqa comments with ruff:ignore (RUF105) (#26423)
  • [ruff] Add rule to use human-readable names in ruff:ignore comments (RUF106) (#26682)
  • [ruff] Add rule to use human-readable names in configuration selectors (RUF201) (#26772)

Bug fixes

  • [flake8-pyi] Fix false positive in __all__ (PYI053) (#26872)

Rule changes

  • [pylint] Ignore mutable type updates in redefined-loo...

    Description has been truncated

@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Jul 25, 2026
@github-actions
github-actions Bot enabled auto-merge (squash) July 25, 2026 18:45
@dependabot dependabot Bot changed the title Bump the python-minor-and-patch group with 13 updates Bump the python-minor-and-patch group across 1 directory with 13 updates Jul 25, 2026
@dependabot
dependabot Bot force-pushed the dependabot/uv/python-minor-and-patch-8de6b47eef branch from 13e7320 to ff5df0e Compare July 25, 2026 18:51
@dependabot
Bump the python-minor-and-patch group across 1 directory with 13 updates
1579c0d 
Bumps the python-minor-and-patch group with 12 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [numpy](https://github.com/numpy/numpy) | `2.3.5` | `2.5.1` |
| [scipy](https://github.com/scipy/scipy) | `1.16.3` | `1.18.0` |
| [scikit-learn](https://github.com/scikit-learn/scikit-learn) | `1.7.2` | `1.9.0` |
| [matplotlib](https://github.com/matplotlib/matplotlib) | `3.10.7` | `3.11.1` |
| [furo](https://github.com/pradyunsg/furo) | `2025.9.25` | `2025.12.19` |
| [sphinx-autodoc-typehints](https://github.com/tox-dev/sphinx-autodoc-typehints) | `3.5.2` | `3.12.1` |
| [pytest](https://github.com/pytest-dev/pytest) | `9.0.3` | `9.1.1` |
| [pytest-cov](https://github.com/pytest-dev/pytest-cov) | `7.0.0` | `7.1.0` |
| [ruff](https://github.com/astral-sh/ruff) | `0.14.6` | `0.15.22` |
| [pyright](https://github.com/RobertCraigie/pyright-python) | `1.1.407` | `1.1.411` |
| [pydoclint](https://github.com/jsh9/pydoclint) | `0.8.3` | `0.9.1` |
| [pre-commit](https://github.com/pre-commit/pre-commit) | `4.5.0` | `4.6.0` |



Updates `numpy` from 2.3.5 to 2.5.1
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.3.5...v2.5.1)

Updates `scipy` from 1.16.3 to 1.18.0
- [Release notes](https://github.com/scipy/scipy/releases)
- [Commits](scipy/scipy@v1.16.3...v1.18.0)

Updates `scikit-learn` from 1.7.2 to 1.9.0
- [Release notes](https://github.com/scikit-learn/scikit-learn/releases)
- [Commits](scikit-learn/scikit-learn@1.7.2...1.9.0)

Updates `matplotlib` from 3.10.7 to 3.11.1
- [Release notes](https://github.com/matplotlib/matplotlib/releases)
- [Commits](matplotlib/matplotlib@v3.10.7...v3.11.1)

Updates `furo` from 2025.9.25 to 2025.12.19
- [Release notes](https://github.com/pradyunsg/furo/releases)
- [Changelog](https://github.com/pradyunsg/furo/blob/main/docs/changelog.md)
- [Commits](pradyunsg/furo@2025.09.25...2025.12.19)

Updates `sphinx-autodoc-typehints` from 3.5.2 to 3.12.1
- [Release notes](https://github.com/tox-dev/sphinx-autodoc-typehints/releases)
- [Commits](tox-dev/sphinx-autodoc-typehints@3.5.2...3.12.1)

Updates `myst-parser` from 4.0.1 to 5.1.0
- [Release notes](https://github.com/executablebooks/MyST-Parser/releases)
- [Changelog](https://github.com/executablebooks/MyST-Parser/blob/master/CHANGELOG.md)
- [Commits](executablebooks/MyST-Parser@v4.0.1...v5.1.0)

Updates `pytest` from 9.0.3 to 9.1.1
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@9.0.3...9.1.1)

Updates `pytest-cov` from 7.0.0 to 7.1.0
- [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst)
- [Commits](pytest-dev/pytest-cov@v7.0.0...v7.1.0)

Updates `ruff` from 0.14.6 to 0.15.22
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/0.15.22/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.14.6...0.15.22)

Updates `pyright` from 1.1.407 to 1.1.411
- [Release notes](https://github.com/RobertCraigie/pyright-python/releases)
- [Commits](RobertCraigie/pyright-python@v1.1.407...v1.1.411)

Updates `pydoclint` from 0.8.3 to 0.9.1
- [Release notes](https://github.com/jsh9/pydoclint/releases)
- [Changelog](https://github.com/jsh9/pydoclint/blob/main/CHANGELOG.md)
- [Commits](jsh9/pydoclint@0.8.3...0.9.1)

Updates `pre-commit` from 4.5.0 to 4.6.0
- [Release notes](https://github.com/pre-commit/pre-commit/releases)
- [Changelog](https://github.com/pre-commit/pre-commit/blob/main/CHANGELOG.md)
- [Commits](pre-commit/pre-commit@v4.5.0...v4.6.0)

---
updated-dependencies:
- dependency-name: furo
  dependency-version: 2025.12.19
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-minor-and-patch
- dependency-name: matplotlib
  dependency-version: 3.11.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-minor-and-patch
- dependency-name: myst-parser
  dependency-version: 5.1.0
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: python-minor-and-patch
- dependency-name: numpy
  dependency-version: 2.5.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-minor-and-patch
- dependency-name: pre-commit
  dependency-version: 4.6.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-minor-and-patch
- dependency-name: pydoclint
  dependency-version: 0.9.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-minor-and-patch
- dependency-name: pyright
  dependency-version: 1.1.411
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-minor-and-patch
- dependency-name: pytest
  dependency-version: 9.1.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-minor-and-patch
- dependency-name: pytest-cov
  dependency-version: 7.1.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-minor-and-patch
- dependency-name: ruff
  dependency-version: 0.15.22
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-minor-and-patch
- dependency-name: scikit-learn
  dependency-version: 1.9.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-minor-and-patch
- dependency-name: scipy
  dependency-version: 1.18.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-minor-and-patch
- dependency-name: sphinx-autodoc-typehints
  dependency-version: 3.12.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-minor-and-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot
dependabot Bot force-pushed the dependabot/uv/python-minor-and-patch-8de6b47eef branch from ff5df0e to 1579c0d Compare July 27, 2026 15:48
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