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Enable Parallel Processing for pysam

Status: Open.

#67 In foerstner-lab/READemption;

· elhossary opened on Jan 27, 2025

Return contribution of genes expression to component of PCA

Status: Open.

#66 In foerstner-lab/READemption;

· konrad opened on Jun 14, 2024

Feature Request: Create z-scores and heatmap plots from z-scores

Status: Open.

#65 In foerstner-lab/READemption;

· Tillsa opened on Jun 13, 2024

[Error] Example for multi-species does not work

Status: Open.

#64 In foerstner-lab/READemption;

· elhossary opened on Apr 7, 2024

[Feature request] Use NCBI datasets to download input files

Status: Open.

#62 In foerstner-lab/READemption;

· elhossary opened on Apr 7, 2024

Assign libraries for paired end data in the reademption deseq command

Status: Open.

#61 In foerstner-lab/READemption;

· termithorbor opened on Apr 5, 2024

Advantage/disadvantage of build_fragments

Status: Open.

#60 In foerstner-lab/READemption;

· termithorbor opened on Mar 14, 2024

Which normalization from gene_quanti is used for Deseq2?

Status: Open.

#58 In foerstner-lab/READemption;

· termithorbor opened on Mar 5, 2024

Feature request: Create Coverage based on CIGAR string instead of start and end position

Status: Open.

#57 In foerstner-lab/READemption;

· Tillsa opened on Dec 20, 2023

Unusually high memory memory usage with gene_quanti

Status: Open.

#56 In foerstner-lab/READemption;

· kmuench opened on Sep 21, 2023

[Clarification] Why are alignments fractional?

Status: Open.

#54 In foerstner-lab/READemption;

· kmuench opened on Sep 11, 2023

Errors and warnings while fragment building

Status: Open.

#53 In foerstner-lab/READemption;

· elhossary opened on Jul 14, 2023