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Updating workflows/VGP-assembly-v2/post-curation-processing from 0.1 to 0.2 #1249

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Updating workflows/VGP-assembly-v2/post-curation-processing from 0.1 to 0.2 #1249
gxydevbot wants to merge 1 commit into
galaxyproject:mainfrom
planemo-autoupdate:workflows/VGP-assembly-v2/post-curation-processing

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Hello! This is an automated update of the following workflow: workflows/VGP-assembly-v2/post-curation-processing. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.

By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:

  • toolshed.g2.bx.psu.edu/repos/iuc/compleasm/compleasm/0.2.6+galaxy3 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/compleasm/compleasm/0.2.6+galaxy4
  • toolshed.g2.bx.psu.edu/repos/iuc/collection_element_identifiers/collection_element_identifiers/0.0.2 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/collection_element_identifiers/collection_element_identifiers/0.0.3
  • toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.28+galaxy2 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.31+galaxy0
  • toolshed.g2.bx.psu.edu/repos/iuc/samtools_fixmate/samtools_fixmate/1.22+galaxy2 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/samtools_fixmate/samtools_fixmate/1.22+galaxy3
  • toolshed.g2.bx.psu.edu/repos/iuc/samtools_merge/samtools_merge/1.22+galaxy1 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/samtools_merge/samtools_merge/1.22+galaxy2
  • toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.33+galaxy0 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.35+galaxy1
  • toolshed.g2.bx.psu.edu/repos/iuc/samtools_markdup/samtools_markdup/1.22+galaxy2 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/samtools_markdup/samtools_markdup/1.22+galaxy3
  • toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1 should be updated to toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1+galaxy0
  • toolshed.g2.bx.psu.edu/repos/iuc/pretext_map/pretext_map/0.2.3+galaxy0 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/pretext_map/pretext_map/0.2.4+galaxy1
  • toolshed.g2.bx.psu.edu/repos/iuc/pretext_snapshot/pretext_snapshot/0.0.5+galaxy1 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/pretext_snapshot/pretext_snapshot/0.0.7+galaxy0

The workflow release number has been updated from 0.1 to 0.2.

If you want to skip this change, close this PR without deleting the branch. It will be reopened if another change is detected.
Any commit from another author than 'planemo-autoupdate' will prevent more auto-updates.
To ignore manual changes and allow autoupdates, delete the branch.

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github-actions Bot commented Jun 1, 2026

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Test Results (powered by Planemo)

Test Summary

Test State Count
Total 2
Passed 1
Error 1
Failure 0
Skipped 0
Errored Tests
  • ❌ Post_Curation.ga_0
Passed Tests
  • ✅ Post_Curation.ga_1

@gxydevbot gxydevbot changed the title Updating workflows/VGP-assembly-v2/post-curation-processing from 0.1 to 0.2 Updating workflows/VGP-assembly-v2/post-curation-processing from 0.1 to 0.2 Jun 15, 2026
@gxydevbot gxydevbot force-pushed the workflows/VGP-assembly-v2/post-curation-processing branch from b6fc793 to 7c13cf4 Compare June 15, 2026 10:30
@gxydevbot

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There are new updates, they have been integrated to the PR, check the file diff.

@github-actions

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Test Results (powered by Planemo)

Test Summary

Test State Count
Total 2
Passed 0
Error 2
Failure 0
Skipped 0
Errored Tests
  • ❌ Post_Curation.ga_0
  • ❌ Post_Curation.ga_1

@gxydevbot gxydevbot force-pushed the workflows/VGP-assembly-v2/post-curation-processing branch from 7c13cf4 to 0a7e99c Compare June 22, 2026 01:15
@gxydevbot

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Contributor Author

There are new updates, they have been integrated to the PR, check the file diff.

@github-actions

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Test Results (powered by Planemo)

Test Summary

Test State Count
Total 2
Passed 0
Error 2
Failure 0
Skipped 0
Errored Tests
  • ❌ Post_Curation.ga_0
  • ❌ Post_Curation.ga_1

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