Refactor package for unified data and device API

.github/workflows/harp.yml

@@ -0,0 +1,144 @@
+name: harp
+
+on:
+    pull_request:
+    push:
+        branches:
+            - main
+    release:
+        types: [published]
+    workflow_dispatch:
+
+jobs:
+    # ---- Tests ----
+    tests:
+        name: Python ${{ matrix.python-version }} on ${{ matrix.os }}
+        runs-on: ${{ matrix.os }}
+        strategy:
+            matrix:
+                os: [ubuntu-latest, windows-latest, macos-latest]
+                python-version: ["3.11", "3.12", "3.13"]
+            fail-fast: false
+        steps:
+            - uses: actions/checkout@v7
+
+            - uses: astral-sh/setup-uv@v8.3.2
+              with:
+                  enable-cache: true
+
+            - name: Install python dependencies
+              run: uv sync --group dev --python ${{ matrix.python-version }}
+
+            - name: Run codespell
+              run: uv run codespell
+
+            - name: Run ruff format
+              run: uv run ruff format --check
+
+            - name: Run ruff check
+              run: uv run ruff check
+
+            - name: Run pyright
+              run: uv run pyright
+
+            - name: Run pytest
+              run: uv run pytest --cov harp
+
+            - name: Build
+              run: uv build --all-packages
+
+    # ---- Release build ----
+    build-release:
+        runs-on: ubuntu-latest
+        name: Build release distributions
+        needs: tests
+        if: github.event_name == 'release' && github.event.action == 'published'
+
+        steps:
+            - uses: actions/checkout@v7
+
+            - uses: astral-sh/setup-uv@v8.3.2
+              with:
+                  enable-cache: true
+
+            - name: Build
+              env:
+                  SETUPTOOLS_SCM_PRETEND_VERSION: ${{ github.event.release.tag_name }}
+              run: uv build --all-packages
+
+            - name: Verify setuptools-scm applied the release tag
+              shell: bash
+              run: |
+                  ls -1 dist/
+                  if ls dist/*-0.0.0.tar.gz >/dev/null 2>&1; then
+                      echo "::error::Built version 0.0.0, so setuptools-scm did not apply the tag. Check that every pyproject.toml still declares a tool.setuptools_scm table."
+                      exit 1
+                  fi
+
+            - name: Remove internal-only packages from dist
+              shell: bash
+              run: rm -f dist/harp_benchmarks-*
+
+            - name: Upload wheels as artifact
+              uses: actions/upload-artifact@v7
+              with:
+                  name: dist
+                  path: dist/
+
+    # ---- Publish to PyPI ----
+    publish-to-pypi:
+        runs-on: ubuntu-latest
+        name: Publish to PyPI
+        needs: build-release
+        environment: pypi
+        permissions:
+            # uv publish exchanges this token with PyPI trusted publishing.
+            id-token: write
+            # action-gh-release attaches the distributions to the release.
+            contents: write
+        steps:
+            - name: Download wheels artifact
+              uses: actions/download-artifact@v8
+              with:
+                  name: dist
+                  path: dist/
+
+            - uses: astral-sh/setup-uv@v8.3.2
+              with:
+                  enable-cache: true
+
+            - name: Publish to PyPI
+              run: uv publish
+
+            - name: Upload wheels to GitHub release
+              uses: softprops/action-gh-release@v3
+              with:
+                  files: dist/*
+
+    # ---- Docs ----
+    build-docs:
+        name: Build and deploy documentation to GitHub Pages
+        runs-on: ubuntu-latest
+        needs: build-release
+        if: github.event_name == 'release' && !github.event.release.prerelease
+        steps:
+            - name: Checkout
+              uses: actions/checkout@v7
+              with:
+                  fetch-depth: 0
+
+            - name: Install uv
+              uses: astral-sh/setup-uv@v8.3.2
+              with:
+                  enable-cache: true
+
+            - name: Install dependencies
+              run: uv sync --group docs
+
+            - name: Configure Git user
+              run: |
+                  git config user.name "github-actions[bot]"
+                  git config user.email "github-actions[bot]@users.noreply.github.com"
+
+            - name: Build & Deploy docs
+              run: uv run mkdocs gh-deploy --force

.gitignore

@@ -1,6 +1,180 @@
-.idea/
-pyharp.egg-info/
-.python-version
-__pycache__
-tests/.pytest_cache
-**/*.bin
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# UV
+#   Similar to Pipfile.lock, it is generally recommended to include uv.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#uv.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/latest/usage/project/#working-with-version-control
+.pdm.toml
+.pdm-python
+.pdm-build/
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#  and can be added to the global gitignore or merged into this file.  For a more nuclear
+#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
+#.idea/
+
+# Ruff stuff:
+.ruff_cache/
+
+# PyPI configuration file
+.pypirc
+
+# vscode
+.vscode/
+
+# Internal benchmark artifacts (harp-benchmarks)
+/benchmark/

.python-version

@@ -0,0 +1,3 @@
+3.13
+3.12
+3.11

LICENSE

@@ -1,6 +1,8 @@
 MIT License
 
 Copyright (c) 2020 OEPS & Filipe Carvalho
+Copyright (c) 2025 Hardware and Software Platform, Champalimaud Foundation
+Copyright (c) harp-tech and Contributors
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal