Conversation
…ltered Add check if all genes were filtered
* Allow warnings to be shown by the logger * Remove excessive installs at the beginning of Helix-mRNA notebook * Update model categories in docs
Co-authored-by: giogix2 <giovanni@Helical-AI-A6000>
Fix mamba ssm installation issue
giogix2
approved these changes
Feb 5, 2025
dalloliogm
reviewed
Feb 5, 2025
| assert mock_data.var[mock_data.var['gene_symbols'] == 'PLEKHN1']['ensembl_id'].values[0] == 'ENSG00000187583' | ||
| assert mock_data.var[mock_data.var['gene_symbols'] == 'HES4']['ensembl_id'].values[0] == 'ENSG00000188290' | ||
|
|
||
| def test_process_data_mapping_to_ensemble_ids_resulting_in_0_genes(self, geneformer, mock_data): |
There was a problem hiding this comment.
minor typo: name of the function should be test_process_data_mapping_to_ensembl_ids (ensembl instead of ensemble)
There was a problem hiding this comment.
(apologies for intruding - I was checking the repository after learning about HelicalAI during the Festival of Genomics, and I saw this commit)
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
4 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.