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update release to use pybiomart#281

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bputzeys merged 4 commits intoreleasefrom
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Nov 4, 2025
Merged

update release to use pybiomart#281
bputzeys merged 4 commits intoreleasefrom
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@bputzeys bputzeys commented Nov 4, 2025

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VolkerBergen and others added 4 commits November 4, 2025 15:48
* Refactor gene mapping to use pybiomart

Refactored gene mapping functions to use pybiomart instead of pyensembl. Equivalent results with >100x speedup.

* Add pybiomart dependency to pyproject.toml

* Remove 'pyensembl' from dependencies

Removed 'pyensembl' from the dependencies list.

* adjust tests

* api-docs fix

* adjust test to handle nans
@bputzeys bputzeys merged commit 13ba79f into release Nov 4, 2025
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