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Refactor normalization calculation ensuring accurate broadcasting in edge cases
…casting Refactor normalization ensuring correct broadcasting
* c2s * updated readme
minor typo i noticed
Updated evo instructions + version
bputzeys
approved these changes
Nov 13, 2025
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This pull request introduces comprehensive support for the new Cell2Sen (C2S-Scale) model to the codebase, including documentation, workflow integration, and extensive unit tests. The changes ensure that users can run, test, and understand the Cell2Sen model for single-cell biology tasks such as embeddings and perturbation prediction. The documentation has been updated to reflect the new model, provide usage examples, and acknowledge the original authors and sources.
Cell2Sen Model Integration
docs/model_cards/c2s.md), including architecture, usage, limitations, and citation information.docs/configs/c2s_config.md).Testing and Validation
ci/tests/test_c2s/test_c2s.py, covering initialization, data processing, embeddings, and perturbation prediction.Workflow and Automation
.github/workflows/main.yml,.github/workflows/release.yml) to run Cell2Sen model scripts as part of CI/CD. [1] [2]Documentation and Acknowledgements
README.mdto announce Cell2Sen integration, add tutorial links, and acknowledge Cell2Sen authors and licensing. [1] [2] [3] [4]