Bring transcriptformer bug fix into release #340
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martinaoliver merged 9 commits intoreleasefrom Mar 10, 2026
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* changed to tf on ensembl * added info on genes expressed and mapped * logger * github pr rerun checks * Bump version to 1.8.1 --------- Co-authored-by: maxime <maxime@helical-ai.com>
Included embeddings for the following species: * canis_lupus_familiaris * macaca_fascicularis * rattus_norvegicus * sus_scrofa as per [Ensembl](https://ftp.ensembl.org/pub/current/fasta/)
More ESM-2 embeddings
Fixing typo in ESM-2 configs on S3 for 4 additional species
This change allows transcriptformer to accept multiple vocabularies of gene embeddings for out-of-sample species
Lists of gene vocabs for TF
dmiv-helical
approved these changes
Mar 10, 2026
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Transcriptformer can now work with out of distribution species