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Include Nicheformer#347

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bputzeys merged 4 commits intoreleasefrom
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Mar 17, 2026
Merged

Include Nicheformer#347
bputzeys merged 4 commits intoreleasefrom
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Dmitry Ivanov and others added 4 commits March 16, 2026 12:21
Adding nicheformer to the portfolio.

Examples of the nicheformer use added to `examples/run_models`

Using `yolksac` to test transcriptformer.
Dropping unseen genes in Transcriptformer's `process_data`

ENSEMBL-convention dataset for the Nicheformer example

Getting raw counts from bladder data for the Nicheformer
@bputzeys bputzeys requested a review from dmiv-helical March 17, 2026 14:59
@bputzeys bputzeys merged commit 8fb0b97 into release Mar 17, 2026
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2 participants