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Nicheformer: ENSEMBL and attn maps (#354)#355

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Mar 19, 2026
Merged

Nicheformer: ENSEMBL and attn maps (#354)#355
bputzeys merged 1 commit intoreleasefrom
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We are adding:

  1. Conversion of gene IDs to ENSEMBL - Automatic conversion to ENSEMBL gene identifiers for Nicheformer #352
  2. Facilities for attention map extraction - Add attention map inspection facilities to the Nicheformer's wrapper #353

We are bumping a dependency version:
black 26.1.0 -> 26.3.1

Bump version

We are adding:
1. Conversion of gene IDs to ENSEMBL - #352
2. Facilities for attention map extraction - #353

We are bumping a dependency version:
black 26.1.0 -> 26.3.1

Bump version
@bputzeys bputzeys requested a review from dmiv-helical March 19, 2026 14:18
@bputzeys bputzeys merged commit d4dc82a into release Mar 19, 2026
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2 participants