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feat: update examples with NPP plots, update bioma figure 4 logic and visualisation#28

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feat: update examples with NPP plots, update bioma figure 4 logic and visualisation#28
pFornagiel wants to merge 7 commits intomainfrom
@pForangiel/update_examples

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Description

This PR extends the examples with number-partitioning visualizations and refreshes the bioma optimisation script for fig4.png.

Number partitioning

  • New scripts: plot_lons.py and plot_metrics.py (plus utils.py) for LON views and analysis.
  • New figures: phase-transition sweep, merged CM-LON views, and 2D/3D NPP examples at several difficulty parameter

Updated figure 4:
fig4

NPP figures:
NPP_merged_cmlon_views
NPP_phase_transition_sweep

@pFornagiel pFornagiel requested a review from WojtAcht April 27, 2026 21:46
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