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  1. TOGA TOGA Public

    TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact o…

    Python 203 27

  2. make_lastz_chains make_lastz_chains Public

    Portable solution to generate genome alignment chains using lastz

    Python 60 15

  3. GenomeAlignmentTools GenomeAlignmentTools Public

    Tools for improving the sensitivity and specificity of genome alignments

    C 58 16

  4. CESAR2.0 CESAR2.0 Public

    C 28 11

  5. GeneLossPipe GeneLossPipe Public

    Perl 25 7

  6. TOGA2 TOGA2 Public

    TOGA2: A faster, more versatile successor of Tool to infer Orthologs from Genome Alignments

    C 25 1

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