Kernel Extension

This is the repository for the source code of Kernel Extension, an extension for the bioimage analysis software Icy, which was developed by members or former members of the Biological Image Analysis unit at Institut Pasteur. This plugin is licensed under LGPL3 license.
Icy is developed and maintained by Biological Image Analysis unit at Institut Pasteur. The source code of Icy is also licensed under a LGPL3 license.

Extension description

Contains basics stuff for Icy like 2D canvas, ROI drawing tools, ROI descriptors, LOCI file importer, etc.

Installation instructions

Install from Icy website

Work In Progress

Install from source code

Requirements

• JDK 17+
• Maven 3.6.3+

Steps

1. Clone from git repository using git clone command
2. Open your terminal and navigate to the folder containing the cloned repository
3. Run mvn command
4. The extension was automatically installed in your local maven repository ~/.m2/repository/, and registered in your Icy workspace

Import in your extension

Add this dependency block in your pom.xml

<dependency>
    <groupId>org.bioimageanalysis.icy</groupId>
    <artifactId>kernel-extension</artifactId>
</dependency>

Citation

Please cite this extension as follows:

Please also cite the Icy software and mention the version of Icy you used (bottom right corner of the GUI or first lines of the Output tab):
de Chaumont, F. et al. (2012) Icy: an open bioimage informatics platform for extended reproducible research, Nature Methods, 9, pp. 690-696
https://icy.bioimageanalysis.org

Author(s)

• Stéphane Dallongeville
• Thomas Musset