Skip to content

infotechsoft/docker-picrust

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

3 Commits
 
 
 
 

Repository files navigation

docker-picrust v1.1.4

PICRUSt docker image based on Conda Miniconda2

PICRUSt: Phylogenetic Investigation of Communities by Reconstruction of Unobserved States

PICRUSt (pronounced “pie crust”) is a bioinformatics software package designed to predict metagenome functional content from marker gene (e.g., 16S rRNA) surveys and full genomes.

Base Image

  • Conda conda/miniconda2-centos7

Installed

  • PICRUSt (1.1.4)

Settings

VOLUME /data/
WORKDIR /data/

Running

docker run -it -v $(pwd):/data infotechsoft/picrust bash
# normalize_by_copy_number.py \
    -i your_otu_table.biom \
    -o normalized_otus.biom

Maintainer

INFOTECH Soft

About

PICRUSt: Phylogenetic Investigation of Communities by Reconstruction of Unobserved States

Resources

Stars

Watchers

Forks

Packages

 
 
 

Contributors