PICRUSt docker image based on Miniconda2
PICRUSt: Phylogenetic Investigation of Communities by Reconstruction of Unobserved States
PICRUSt (pronounced “pie crust”) is a bioinformatics software package designed to predict metagenome functional content from marker gene (e.g., 16S rRNA) surveys and full genomes.
- Conda conda/miniconda2-centos7
- PICRUSt (1.1.4)
VOLUME /data/
WORKDIR /data/
docker run -it -v $(pwd):/data infotechsoft/picrust bash
# normalize_by_copy_number.py \
-i your_otu_table.biom \
-o normalized_otus.biom