Backend performance analysis

backend-performance-benchmark/2019_DCPT/benchmark_results/cython/run_001/comparison_continuous.csv

@@ -0,0 +1,11 @@
+Energy_MeV,dose_Gy,dose_rate_factor,time_s,dose_rate_water_Gy_s,dose_rate_air_Gy_s,k_s,dose_rate_air_Gy_min,k_s_IonTracks,difference,relative_error_%,absolute_error
+150,0.672,1.0,0.004184,4.167,3.665,1.0025,219.9,1.0031842406192852,0.0006842406192852923,0.06825342835763515,0.0006842406192852923
+150,0.672,0.5,0.008216,2.122,1.866,1.0013,111.96000000000001,1.0017329029459692,0.0004329029459690936,0.04323409027954595,0.0004329029459690936
+150,0.672,0.2,0.020117,0.867,0.762,1.0005,45.72,1.0008665681172764,0.00036656811727642236,0.03663849248140154,0.00036656811727642236
+226,0.673,1.0,0.00277,6.378,5.61,1.0038,336.6,1.0048431258084969,0.0010431258084968587,0.10391769361395284,0.0010431258084968587
+226,0.673,0.5,0.005401,3.271,2.877,1.0019,172.61999999999998,1.0024726720052124,0.0005726720052123824,0.05715859918279093,0.0005726720052123824
+226,0.673,0.2,0.013849,1.276,1.122,1.0008,67.32000000000001,1.0011052430184895,0.0003052430184895538,0.030499901927413454,0.0003052430184895538
+244,0.676,1.0,0.002562,6.939,6.103,1.0041,366.18,1.0052501443661495,0.0011501443661494637,0.11454480292296222,0.0011501443661494637
+244,0.676,0.5,0.00525,3.386,2.978,1.002,178.68,1.0025627978554872,0.0005627978554871849,0.056167450647423636,0.0005627978554871849
+244,0.676,0.2,0.012956,1.372,1.207,1.0008,72.42,1.0011478459597463,0.00034784595974635124,0.03475679054220136,0.00034784595974635124
+70,0.825,1.0,0.022265,0.936,0.823,1.0006,49.379999999999995,1.0010939815127191,0.0004939815127191771,0.04936853015382542,0.0004939815127191771

backend-performance-benchmark/2019_DCPT/benchmark_results/cython/run_001/comparison_continuous_clean.csv

@@ -0,0 +1,11 @@
+Energy_MeV,dose_rate_air_Gy_s,k_s,k_s_IonTracks,difference,relative_error_%,absolute_error
+150,3.665,1.0025,1.0031842406192852,0.0006842406192852923,0.06825342835763515,0.0006842406192852923
+150,1.866,1.0013,1.0017329029459692,0.0004329029459690936,0.04323409027954595,0.0004329029459690936
+150,0.762,1.0005,1.0008665681172764,0.00036656811727642236,0.03663849248140154,0.00036656811727642236
+226,5.61,1.0038,1.0048431258084969,0.0010431258084968587,0.10391769361395284,0.0010431258084968587
+226,2.877,1.0019,1.0024726720052124,0.0005726720052123824,0.05715859918279093,0.0005726720052123824
+226,1.122,1.0008,1.0011052430184895,0.0003052430184895538,0.030499901927413454,0.0003052430184895538
+244,6.103,1.0041,1.0052501443661495,0.0011501443661494637,0.11454480292296222,0.0011501443661494637
+244,2.978,1.002,1.0025627978554872,0.0005627978554871849,0.056167450647423636,0.0005627978554871849
+244,1.207,1.0008,1.0011478459597463,0.00034784595974635124,0.03475679054220136,0.00034784595974635124
+70,0.823,1.0006,1.0010939815127191,0.0004939815127191771,0.04936853015382542,0.0004939815127191771

backend-performance-benchmark/2019_DCPT/benchmark_results/cython/run_001/comparison_initial.csv

@@ -0,0 +1,5 @@
+Energy_MeV,k_s_experimental,k_s_IonTracks,difference,relative_error_%
+70,1.0006,1.0003619141760138,-0.00023808582398610056,-0.023794305815120986
+150,1.0005,1.0002065945483714,-0.0002934054516285922,-0.02932588222174835
+226,1.0008,1.0001579920055679,-0.0006420079944320367,-0.06414947985931622
+244,1.0008,1.0001507878033964,-0.0006492121966035214,-0.06486932420099135

backend-performance-benchmark/2019_DCPT/benchmark_results/cython/run_001/run_log.txt

@@ -0,0 +1,84 @@
+Command: C:\Users\Jakub Kalinski\Documents\GitHub\IonTracks-Cython\venv\Scripts\python.exe -u C:\Users\Jakub Kalinski\Documents\GitHub\IonTracks-Cython\experimental-data\2019_DCPT\test_experimental_data.py --backend cython --output-dir C:\Users\Jakub Kalinski\Documents\GitHub\IonTracks-Cython\experimental-data\2019_DCPT\benchmark_results\cython\run_001
+Return code: 0
+Elapsed time: 1197.70 seconds
+
+======================================================================
+STDOUT:
+======================================================================
+======================================================================
+TESTING EXPERIMENTAL DATA DCPT 2019
+======================================================================
+
+Loaded 10 experimental measurements
+Energies: [np.int64(70), np.int64(150), np.int64(226), np.int64(244)] MeV
+Voltage: 200 V
+Electrode gap: 0.2 cm
+
+======================================================================
+METHOD 1: INITIAL RECOMBINATION
+======================================================================
+Calculating for 70 MeV...
+Calculating for 150 MeV...
+Calculating for 226 MeV...
+Calculating for 244 MeV...
+
+Initial Recombination Comparison:
+ Energy_MeV  k_s_experimental  k_s_IonTracks  difference  relative_error_%
+         70            1.0006       1.000362   -0.000238         -0.023794
+        150            1.0005       1.000207   -0.000293         -0.029326
+        226            1.0008       1.000158   -0.000642         -0.064149
+        244            1.0008       1.000151   -0.000649         -0.064869
+
+======================================================================
+METHOD 2: CONTINUOUS BEAM (General Recombination)
+======================================================================
+WARNING: This may take several minutes...
+Progress: 1/10 (10.0%)
+Progress: 6/10 (60.0%)
+
+Continuous Beam Comparison:
+ Energy_MeV  dose_rate_air_Gy_s    k_s  k_s_IonTracks  difference  relative_error_%
+         70               0.823 1.0006       1.001094    0.000494             0.049
+        150               0.762 1.0005       1.000867    0.000367             0.037
+        150               1.866 1.0013       1.001733    0.000433             0.043
+        150               3.665 1.0025       1.003184    0.000684             0.068
+        226               1.122 1.0008       1.001105    0.000305             0.030
+        226               2.877 1.0019       1.002473    0.000573             0.057
+        226               5.610 1.0038       1.004843    0.001043             0.104
+        244               1.207 1.0008       1.001148    0.000348             0.035
+        244               2.978 1.0020       1.002563    0.000563             0.056
+        244               6.103 1.0041       1.005250    0.001150             0.115
+
+=== Error Statistics ===
+Number of successful calculations: 10/10
+Mean absolute error: 0.000596
+Mean relative error: 0.059%
+Median relative error: 0.053%
+Max relative error: 0.115%
+Min relative error: 0.030%
+Standard deviation: 0.029%
+
+======================================================================
+GENERATING PLOTS
+======================================================================
+[OK] Saved: initial_recombination_comparison.png
+[OK] Saved: continuous_beam_comparison.png
+[OK] Saved: relative_error.png
+
+======================================================================
+SAVING RESULTS
+======================================================================
+[OK] Saved: comparison_initial.csv
+[OK] Saved: comparison_continuous.csv
+  NOTE: Calculations used dose_rate_air_Gy_s (not dose_rate_water_Gy_s)
+[OK] Saved: comparison_continuous_clean.csv (essential columns only)
+
+All results saved in: C:\Users\Jakub Kalinski\Documents\GitHub\IonTracks-Cython\experimental-data\2019_DCPT\benchmark_results\cython\run_001
+
+======================================================================
+TESTING COMPLETED
+======================================================================
+
+======================================================================
+STDERR:
+======================================================================

backend-performance-benchmark/2019_DCPT/benchmark_results/cython/run_002/comparison_continuous.csv

@@ -0,0 +1,11 @@
+Energy_MeV,dose_Gy,dose_rate_factor,time_s,dose_rate_water_Gy_s,dose_rate_air_Gy_s,k_s,dose_rate_air_Gy_min,k_s_IonTracks,difference,relative_error_%,absolute_error
+150,0.672,1.0,0.004184,4.167,3.665,1.0025,219.9,1.003273481324495,0.0007734813244950622,0.07715524433865958,0.0007734813244950622
+150,0.672,0.5,0.008216,2.122,1.866,1.0013,111.96000000000001,1.0017084153349103,0.000408415334910206,0.040788508430061515,0.000408415334910206
+150,0.672,0.2,0.020117,0.867,0.762,1.0005,45.72,1.0008025813138797,0.000302581313879724,0.030243009883030886,0.000302581313879724
+226,0.673,1.0,0.00277,6.378,5.61,1.0038,336.6,1.004827856049795,0.0010278560497949396,0.10239649828600714,0.0010278560497949396
+226,0.673,0.5,0.005401,3.271,2.877,1.0019,172.61999999999998,1.0025507249820989,0.0006507249820988381,0.06494909492951773,0.0006507249820988381
+226,0.673,0.2,0.013849,1.276,1.122,1.0008,67.32000000000001,1.001052953774079,0.00025295377407918984,0.02527515728209331,0.00025295377407918984
+244,0.676,1.0,0.002562,6.939,6.103,1.0041,366.18,1.005315982423762,0.0012159824237620853,0.12110172530246842,0.0012159824237620853
+244,0.676,0.5,0.00525,3.386,2.978,1.002,178.68,1.0026310045971174,0.0006310045971174016,0.06297451069035945,0.0006310045971174016
+244,0.676,0.2,0.012956,1.372,1.207,1.0008,72.42,1.0011174398430913,0.00031743984309140494,0.03171860942160321,0.00031743984309140494
+70,0.825,1.0,0.022265,0.936,0.823,1.0006,49.379999999999995,1.0010417788071833,0.00044177880718332396,0.04415138988440176,0.00044177880718332396

backend-performance-benchmark/2019_DCPT/benchmark_results/cython/run_002/comparison_continuous_clean.csv

@@ -0,0 +1,11 @@
+Energy_MeV,dose_rate_air_Gy_s,k_s,k_s_IonTracks,difference,relative_error_%,absolute_error
+150,3.665,1.0025,1.003273481324495,0.0007734813244950622,0.07715524433865958,0.0007734813244950622
+150,1.866,1.0013,1.0017084153349103,0.000408415334910206,0.040788508430061515,0.000408415334910206
+150,0.762,1.0005,1.0008025813138797,0.000302581313879724,0.030243009883030886,0.000302581313879724
+226,5.61,1.0038,1.004827856049795,0.0010278560497949396,0.10239649828600714,0.0010278560497949396
+226,2.877,1.0019,1.0025507249820989,0.0006507249820988381,0.06494909492951773,0.0006507249820988381
+226,1.122,1.0008,1.001052953774079,0.00025295377407918984,0.02527515728209331,0.00025295377407918984
+244,6.103,1.0041,1.005315982423762,0.0012159824237620853,0.12110172530246842,0.0012159824237620853
+244,2.978,1.002,1.0026310045971174,0.0006310045971174016,0.06297451069035945,0.0006310045971174016
+244,1.207,1.0008,1.0011174398430913,0.00031743984309140494,0.03171860942160321,0.00031743984309140494
+70,0.823,1.0006,1.0010417788071833,0.00044177880718332396,0.04415138988440176,0.00044177880718332396

backend-performance-benchmark/2019_DCPT/benchmark_results/cython/run_002/comparison_initial.csv

@@ -0,0 +1,5 @@
+Energy_MeV,k_s_experimental,k_s_IonTracks,difference,relative_error_%
+70,1.0006,1.0003619141760138,-0.00023808582398610056,-0.023794305815120986
+150,1.0005,1.0002065945483714,-0.0002934054516285922,-0.02932588222174835
+226,1.0008,1.0001579920055679,-0.0006420079944320367,-0.06414947985931622
+244,1.0008,1.0001507878033964,-0.0006492121966035214,-0.06486932420099135

backend-performance-benchmark/2019_DCPT/benchmark_results/cython/run_002/run_log.txt

@@ -0,0 +1,84 @@
+Command: C:\Users\Jakub Kalinski\Documents\GitHub\IonTracks-Cython\venv\Scripts\python.exe -u C:\Users\Jakub Kalinski\Documents\GitHub\IonTracks-Cython\experimental-data\2019_DCPT\test_experimental_data.py --backend cython --output-dir C:\Users\Jakub Kalinski\Documents\GitHub\IonTracks-Cython\experimental-data\2019_DCPT\benchmark_results\cython\run_002
+Return code: 0
+Elapsed time: 1156.06 seconds
+
+======================================================================
+STDOUT:
+======================================================================
+======================================================================
+TESTING EXPERIMENTAL DATA DCPT 2019
+======================================================================
+
+Loaded 10 experimental measurements
+Energies: [np.int64(70), np.int64(150), np.int64(226), np.int64(244)] MeV
+Voltage: 200 V
+Electrode gap: 0.2 cm
+
+======================================================================
+METHOD 1: INITIAL RECOMBINATION
+======================================================================
+Calculating for 70 MeV...
+Calculating for 150 MeV...
+Calculating for 226 MeV...
+Calculating for 244 MeV...
+
+Initial Recombination Comparison:
+ Energy_MeV  k_s_experimental  k_s_IonTracks  difference  relative_error_%
+         70            1.0006       1.000362   -0.000238         -0.023794
+        150            1.0005       1.000207   -0.000293         -0.029326
+        226            1.0008       1.000158   -0.000642         -0.064149
+        244            1.0008       1.000151   -0.000649         -0.064869
+
+======================================================================
+METHOD 2: CONTINUOUS BEAM (General Recombination)
+======================================================================
+WARNING: This may take several minutes...
+Progress: 1/10 (10.0%)
+Progress: 6/10 (60.0%)
+
+Continuous Beam Comparison:
+ Energy_MeV  dose_rate_air_Gy_s    k_s  k_s_IonTracks  difference  relative_error_%
+         70               0.823 1.0006       1.001042    0.000442             0.044
+        150               0.762 1.0005       1.000803    0.000303             0.030
+        150               1.866 1.0013       1.001708    0.000408             0.041
+        150               3.665 1.0025       1.003273    0.000773             0.077
+        226               1.122 1.0008       1.001053    0.000253             0.025
+        226               2.877 1.0019       1.002551    0.000651             0.065
+        226               5.610 1.0038       1.004828    0.001028             0.102
+        244               1.207 1.0008       1.001117    0.000317             0.032
+        244               2.978 1.0020       1.002631    0.000631             0.063
+        244               6.103 1.0041       1.005316    0.001216             0.121
+
+=== Error Statistics ===
+Number of successful calculations: 10/10
+Mean absolute error: 0.000602
+Mean relative error: 0.060%
+Median relative error: 0.054%
+Max relative error: 0.121%
+Min relative error: 0.025%
+Standard deviation: 0.032%
+
+======================================================================
+GENERATING PLOTS
+======================================================================
+[OK] Saved: initial_recombination_comparison.png
+[OK] Saved: continuous_beam_comparison.png
+[OK] Saved: relative_error.png
+
+======================================================================
+SAVING RESULTS
+======================================================================
+[OK] Saved: comparison_initial.csv
+[OK] Saved: comparison_continuous.csv
+  NOTE: Calculations used dose_rate_air_Gy_s (not dose_rate_water_Gy_s)
+[OK] Saved: comparison_continuous_clean.csv (essential columns only)
+
+All results saved in: C:\Users\Jakub Kalinski\Documents\GitHub\IonTracks-Cython\experimental-data\2019_DCPT\benchmark_results\cython\run_002
+
+======================================================================
+TESTING COMPLETED
+======================================================================
+
+======================================================================
+STDERR:
+======================================================================

backend-performance-benchmark/2019_DCPT/benchmark_results/cython/run_003/comparison_continuous.csv

@@ -0,0 +1,11 @@
+Energy_MeV,dose_Gy,dose_rate_factor,time_s,dose_rate_water_Gy_s,dose_rate_air_Gy_s,k_s,dose_rate_air_Gy_min,k_s_IonTracks,difference,relative_error_%,absolute_error
+150,0.672,1.0,0.004184,4.167,3.665,1.0025,219.9,1.0032827658174972,0.0007827658174972552,0.07808137830396561,0.0007827658174972552
+150,0.672,0.5,0.008216,2.122,1.866,1.0013,111.96000000000001,1.0018843819991743,0.0005843819991742105,0.05836232888986422,0.0005843819991742105
+150,0.672,0.2,0.020117,0.867,0.762,1.0005,45.72,1.0008396088696578,0.0003396088696578925,0.03394391500828511,0.0003396088696578925
+226,0.673,1.0,0.00277,6.378,5.61,1.0038,336.6,1.004760559994233,0.0009605599942330567,0.09569236842329713,0.0009605599942330567
+226,0.673,0.5,0.005401,3.271,2.877,1.0019,172.61999999999998,1.0025742056272409,0.0006742056272408536,0.06729270658158036,0.0006742056272408536
+226,0.673,0.2,0.013849,1.276,1.122,1.0008,67.32000000000001,1.0011862187303433,0.0003862187303433906,0.03859100023415174,0.0003862187303433906
+244,0.676,1.0,0.002562,6.939,6.103,1.0041,366.18,1.005240305464198,0.001140305464198077,0.11356493020596325,0.001140305464198077
+244,0.676,0.5,0.00525,3.386,2.978,1.002,178.68,1.0026459665754444,0.0006459665754443566,0.0644677221002352,0.0006459665754443566
+244,0.676,0.2,0.012956,1.372,1.207,1.0008,72.42,1.001264015080931,0.0004640150809311905,0.046364416559871155,0.0004640150809311905
+70,0.825,1.0,0.022265,0.936,0.823,1.0006,49.379999999999995,1.0010139939486804,0.0004139939486804689,0.04137457012597131,0.0004139939486804689

backend-performance-benchmark/2019_DCPT/benchmark_results/cython/run_003/comparison_continuous_clean.csv

@@ -0,0 +1,11 @@
+Energy_MeV,dose_rate_air_Gy_s,k_s,k_s_IonTracks,difference,relative_error_%,absolute_error
+150,3.665,1.0025,1.0032827658174972,0.0007827658174972552,0.07808137830396561,0.0007827658174972552
+150,1.866,1.0013,1.0018843819991743,0.0005843819991742105,0.05836232888986422,0.0005843819991742105
+150,0.762,1.0005,1.0008396088696578,0.0003396088696578925,0.03394391500828511,0.0003396088696578925
+226,5.61,1.0038,1.004760559994233,0.0009605599942330567,0.09569236842329713,0.0009605599942330567
+226,2.877,1.0019,1.0025742056272409,0.0006742056272408536,0.06729270658158036,0.0006742056272408536
+226,1.122,1.0008,1.0011862187303433,0.0003862187303433906,0.03859100023415174,0.0003862187303433906
+244,6.103,1.0041,1.005240305464198,0.001140305464198077,0.11356493020596325,0.001140305464198077
+244,2.978,1.002,1.0026459665754444,0.0006459665754443566,0.0644677221002352,0.0006459665754443566
+244,1.207,1.0008,1.001264015080931,0.0004640150809311905,0.046364416559871155,0.0004640150809311905
+70,0.823,1.0006,1.0010139939486804,0.0004139939486804689,0.04137457012597131,0.0004139939486804689

backend-performance-benchmark/2019_DCPT/benchmark_results/cython/run_003/comparison_initial.csv

@@ -0,0 +1,5 @@
+Energy_MeV,k_s_experimental,k_s_IonTracks,difference,relative_error_%
+70,1.0006,1.0003619141760138,-0.00023808582398610056,-0.023794305815120986
+150,1.0005,1.0002065945483714,-0.0002934054516285922,-0.02932588222174835
+226,1.0008,1.0001579920055679,-0.0006420079944320367,-0.06414947985931622
+244,1.0008,1.0001507878033964,-0.0006492121966035214,-0.06486932420099135