Updates to improve the Softwipe score#77

Merged

bqminh merged 49 commits intoiqtree:masterfrom

trongnhanuit:master

Mar 12, 2026

Commits on Jun 26, 2025

added 10 more ASSERTs

thomaskf
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Commits on Jun 27, 2025

ignore softwipe_build
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merge with "replaced NULL with nullptr (1) - 8f0f9f80"

thomaskf
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merge with "replace NULL by nullptr (2) - 90f19976"

thomaskf
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replace NULL by nullptr (3)

thomaskf
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Replace NULL by nullptr (4)

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Merge with "Fixed the issue of readability-braces-around-statements (1) - 0fa9ba99"

thomaskf
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Add the testing scripts

thomaskf
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set up the testings for github workflow

thomaskf
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update the setting for testing in workflow

thomaskf
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Update the scripts for verification of the testing results

thomaskf
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updated the test cases for testing in workflow

thomaskf
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Updated the workflow so that all MacOS and all Linux will perform testings on IQTREE

thomaskf
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Update ci.yaml

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Fix Indentation

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Update the testing workflow for Windows

thomaskf
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Update the workflow for testing on Windows

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fixed the issue in testing under Github Workflow on Windows

thomaskf
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avoid using namespace directive in global context in header
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Merge with "add "override" to functions if needed - bc3ef0e2"
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add "override" to functions if needed 2
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add override to functions when needed
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Merge with "add () to avoid "warning: '*' has higher precedence than '+'; add parentheses to explicitly specify the order of operations" - f3754acf"
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Add ASSERT before using pointers to avoid "warning: Possible null pointer dereference" (cppcheck)
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Merge with "Add ASSERT before using pointers to avoid warning: Either the condition 'var' is redundant or there is possible null pointer dereference - a6fbe97b"
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avoid warning Uninitialized variable
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Merge with "disable unused functions to avoid cppcheck style warnings 1 - 431375ff"
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Merge with "disable unused functions to avoid cppcheck style warnings 2 - 80c35c34"
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disable unused functions to avoid cppcheck style warnings 3
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Merge with "disable unused variables - 63767c04"
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disable unused functions to avoid cppcheck style warnings 4
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Merge with "Fixed the issue of readability-braces-around-statements reported by Softwipe - aff81cd1"

thomaskf
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Merge with "Fixed the issue of readability-braces-around-statements reported by Softwipe 2 - 4df2bad2"

thomaskf
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Merge with "Add const to constant variables 1 - bab71d0f"
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Merge with "Add const to constant variables 2 - f22982ba"
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Merge with "Add const to constant variables 3 - 28c39d55"
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Merge with "Add const to constant variables 4 - 6490f96f"
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Merge with "Add const to constant variables 5 - 397326c7"
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comment out "using namespace std;" to avoid warnings
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Commits on Jul 2, 2025

Resolve code conflicts when merging "replace NULL by nullptr (2) - 90f19976", confirmed with Huaiyan
trongnhanuit
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Commits on Jul 4, 2025

Commits on Mar 6, 2026

Merge branch 'iqtree3_master'
trongnhanuit
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