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78 changes: 38 additions & 40 deletions .github/workflows/ci.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -24,32 +24,24 @@ jobs:
python-version: ["3.9", "3.10"]
steps:
- uses: actions/checkout@v3
- name: Cache conda
uses: actions/cache@v3
env:
# Increase this value to reset cache if ci/environment.yml has not changed
CACHE_NUMBER: 0
- name: Create conda environment
uses: mamba-org/provision-with-micromamba@main
with:
path: ~/conda_pkgs_dir
key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('ci/environment.yml') }}
- uses: conda-incubator/setup-miniconda@v2
with:
mamba-version: "*"
channels: conda-forge, defaults
activate-environment: test_env_xarrayutils # Defined in ci/environment*.yml
auto-update-conda: false
python-version: ${{ matrix.python-version }}
cache-downloads: true
cache-env: true
micromamba-version: 'latest'
environment-file: ci/environment.yml
use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly!
- name: Set up conda environment
extra-specs: |
python=${{ matrix.python-version }}
- name: Install xarrayutils
run: |
python -m pip install -e .
python -m pip install -e . --no-deps
conda list
- name: Run Tests
run: |
pytest -n auto --cov=./ --cov-report=xml
- name: Upload code coverage to Codecov
uses: codecov/codecov-action@v3.1.1
uses: codecov/codecov-action@v3.1.3
with:
file: ./coverage.xml
flags: unittests
Expand All @@ -63,25 +55,31 @@ jobs:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v3
- name: Cache conda
uses: actions/cache@v3
env:
# Increase this value to reset cache if ci/environment-upstream-dev.yml has not changed
CACHE_NUMBER: 0
with:
path: ~/conda_pkgs_dir
key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('ci/environment-upstream-dev.yml') }}
- uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: test_env_xarrayutils # Defined in ci/environment-upstream-dev.yml
auto-update-conda: false
environment-file: ci/environment-upstream-dev.yml
use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly!
- name: Set up conda environment
run: |
python -m pip install -e .
conda list
- name: Run Tests
run: |
pytest -n auto
- uses: actions/checkout@v3
- name: Create conda environment
uses: mamba-org/provision-with-micromamba@main
with:
cache-downloads: true
cache-env: true
micromamba-version: 'latest'
environment-file: ci/environment-upstream-dev.yml
extra-specs: |
python=3.10
- name: Install xarrayutils
run: |
python -m pip install -e . --no-deps
conda list
- name: Run Tests
run: |
pytest -n auto --cov=./ --cov-report=xml
- name: Upload code coverage to Codecov
uses: codecov/codecov-action@v3.1.3
with:
file: ./coverage.xml
flags: unittests
env_vars: OS,PYTHON
name: codecov-umbrella
fail_ci_if_error: false
- name: Run Tests
run: |
pytest -n auto
4 changes: 2 additions & 2 deletions xarrayutils/test/datasets.py
Original file line number Diff line number Diff line change
Expand Up @@ -13,10 +13,10 @@
[2, 2, 2, 4, 4, 4, 6, 6],
[2, 2, 2, 4, 4, 4, 6, 6],
],
dtype=np.float,
dtype=float,
)

ones_2d = np.ones([6, 8], dtype=np.float)
ones_2d = np.ones([6, 8], dtype=float)

ones_2d_nan = ones_2d.copy()
ones_2d_nan[2, 2] = np.nan
Expand Down
5 changes: 1 addition & 4 deletions xarrayutils/test/test_utils.py
Original file line number Diff line number Diff line change
Expand Up @@ -176,11 +176,8 @@ def _linregress_ufunc(a: np.ndarray, b: np.ndarray, nanmask: bool = False):
({"x": -1, "y": 1}, "x"),
],
)
# @pytest.mark.parametrize("variant", range(3))
@pytest.mark.parametrize("variant", [0])
# @pytest.mark.parametrize("dtype", [None, np.float])
@pytest.mark.parametrize("dtype", [None])
# @pytest.mark.parametrize("nans", [False, True])
@pytest.mark.parametrize("nans", [True, "all"])
@pytest.mark.parametrize(
"ni, parameter", enumerate(["slope", "intercept", "r_value", "p_value", "std_err"])
Expand Down Expand Up @@ -599,7 +596,7 @@ def test_aggregate_input_da(dataarray_2d_example):


def test_aggregate_w_nanmean(dataarray_2d_ones, dataarray_2d_ones_nan):
expected_result = np.array([[1, 1], [1, 1]], dtype=np.float)
expected_result = np.array([[1, 1], [1, 1]], dtype=float)
blocks = [("i", 3), ("j", 3)]

data = dataarray_2d_ones_nan
Expand Down
2 changes: 1 addition & 1 deletion xarrayutils/utils.py
Original file line number Diff line number Diff line change
Expand Up @@ -109,7 +109,7 @@ def linear_trend(obj, dim):
trend is in units/yr.
"""
x = xr.DataArray(
np.arange(len(obj[dim])).astype(np.float), dims=dim, coords={dim: obj[dim]}
np.arange(len(obj[dim])).astype(float), dims=dim, coords={dim: obj[dim]}
)
trend = xr_linregress(x, obj, dim=dim)
return trend
Expand Down