Ktfix3#6

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cseed wants to merge 51 commits intojigold:keytable4from

Commits on Nov 17, 2016

Fixed bug causing type mismatch when using --csq on a VDS with existing csq annotation (#1101)

lfrancioli
authored and
cseed
committed
Added gtj, gtk, gtIndex to expr. (#1102)
cseed
authored
Added keep=True to filter methods. (#1104)
cseed
authored

Commits on Nov 18, 2016

Updated python export_plink. (#1109)

cseed
authored and
tpoterba
committed

Commits on Nov 21, 2016

Added statistical functions useful for meta-analysis, genomic control lambda (#1111)

jbloom22
authored and
tpoterba
committed
changed nSmaller to nLess for histograms (#1112)

jbloom22
authored and
tpoterba
committed
Fix python methods, expose samples_to_pandas, integrate logging (#1085)

tpoterba
authored and
cseed
committed
experiment with parser

jigold
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cseed
committed
try to refactor ExportAggregate

jigold
authored and
cseed
committed
test

jigold
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cseed
committed
trying out things

jigold
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cseed
committed
working wout tests; needs improvements

jigold
authored and
cseed
committed
working tests

jigold
authored and
cseed
committed
Added hidden command for creating a key-table

jigold
authored and
cseed
committed
removed exportaggregator

jigold
authored and
cseed
committed
removed explicit casting to IndexedSeq

jigold
authored and
cseed
committed
export and kt in state

jigold
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cseed
committed
made command for clear kt hidden

jigold
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cseed
committed
started filterExpr

jigold
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cseed
committed
filter works with key table being a pair rdd

jigold
authored and
cseed
committed
added import, export, filter

jigold
authored and
cseed
committed
started writing join

jigold
authored and
cseed
committed
implemented interface

jigold
authored and
cseed
committed
got aggregateByKey working

jigold
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cseed
committed
added to funct registry and annotate insert values working

jigold
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cseed
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annotate working with only adding values

jigold
authored and
cseed
committed
import, export, aggByKey, filter, annotate done

jigold
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cseed
committed
started join

jigold
authored and
cseed
committed
50% done with join

jigold
authored and
cseed
committed
join almost done

jigold
authored and
cseed
committed
started working on aggregate

jigold
authored and
cseed
committed
Added most key table operations to pyhail

jigold
authored and
cseed
committed
removed commands from tests

jigold
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cseed
committed
removed key table commands from scala

jigold
authored and
cseed
committed
lots of debug statements for aggregate; finished join/forall/exists tests

jigold
authored and
cseed
committed
started getting docs to work

jigold
authored and
cseed
committed
done with python bindings

jigold
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cseed
committed
tried aggregator with rows

jigold
authored and
cseed
committed
fixed formatting of arguments

jigold
authored and
cseed
committed
reformatted code

jigold
authored and
cseed
committed
Fixed aggregation serialization sharing bug.
cseed
committed
removed debugging statements

jigold
authored and
cseed
committed
rebased with master

jigold
authored and
cseed
committed
added python tests

jigold
authored and
cseed
committed
Fixed additional failures.
cseed
committed
Minor edits.
cseed
committed
Fixed python imports.
cseed
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Finalize rebase.
cseed
committed
Addressed comments.
cseed
committed

Commits on Nov 22, 2016