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Update to pom-scijava 44 #128

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19e7c7f
Update license headers for 2026
ctrueden Jun 15, 2026
36ea9f8
POM: update parent to pom-scijava 44.0.0
ctrueden Jun 15, 2026
4da5555
POM: add myself as co-maintainer
ctrueden Jun 15, 2026
81913f2
Update CI to current configuration
ctrueden Jun 15, 2026
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23 changes: 0 additions & 23 deletions .github/workflows/build-pr.yml
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This file was deleted.

12 changes: 9 additions & 3 deletions .github/workflows/build-main.yml → .github/workflows/build.yml
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Expand Up @@ -6,27 +6,33 @@ on:
- master
tags:
- "*-[0-9]+.*"
pull_request:
branches:
- master

jobs:
build:
runs-on: ubuntu-latest

steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v4
- name: Set up Java
uses: actions/setup-java@v2
uses: actions/setup-java@v4
with:
java-version: '8'
distribution: 'zulu'
cache: 'maven'
- name: Set up CI environment
run: .github/setup.sh
shell: bash
- name: Execute the build
run: .github/build.sh
shell: bash
env:
GPG_KEY_NAME: ${{ secrets.GPG_KEY_NAME }}
GPG_PASSPHRASE: ${{ secrets.GPG_PASSPHRASE }}
MAVEN_USER: ${{ secrets.MAVEN_USER }}
MAVEN_PASS: ${{ secrets.MAVEN_PASS }}
OSSRH_PASS: ${{ secrets.OSSRH_PASS }}
CENTRAL_USER: ${{ secrets.CENTRAL_USER }}
CENTRAL_PASS: ${{ secrets.CENTRAL_PASS }}
SIGNING_ASC: ${{ secrets.SIGNING_ASC }}
2 changes: 1 addition & 1 deletion LICENSE.txt
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@@ -1,4 +1,4 @@
Copyright (c) 2017 - 2024, Matthias Arzt
Copyright (c) 2017 - 2026, Matthias Arzt
All rights reserved.

Redistribution and use in source and binary forms, with or without modification,
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2 changes: 1 addition & 1 deletion README.md
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@@ -1,4 +1,4 @@
[![](https://github.com/juglab/labkit-ui/actions/workflows/build-main.yml/badge.svg)](https://github.com/juglab/labkit-ui/actions/workflows/build-main.yml)
[![Build Status](https://github.com/juglab/labkit-ui/actions/workflows/build.yml/badge.svg)](https://github.com/juglab/labkit-ui/actions/workflows/build.yml)

# Labkit (UI)

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37 changes: 27 additions & 10 deletions pom.xml
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Expand Up @@ -5,7 +5,7 @@
<parent>
<groupId>org.scijava</groupId>
<artifactId>pom-scijava</artifactId>
<version>38.0.1</version>
<version>44.0.0</version>
</parent>

<groupId>sc.fiji</groupId>
Expand Down Expand Up @@ -42,19 +42,30 @@
<role>founder</role>
</roles>
</developer>
<developer>
<id>ctrueden</id>
<name>Curtis Rueden</name>
<url>https://imagej.net/people/ctrueden</url>
<roles>
<role>maintainer</role>
</roles>
</developer>
</developers>
<contributors>
<contributor>
<name>Tobias Pietzsch</name>
<url>https://imagej.net/people/tpietzsch</url>
<properties><id>tpietzsch</id></properties>
</contributor>
<contributor>
<name>Deborah Schmidt</name>
<url>https://imagej.net/people/frauzufall</url>
<properties><id>frauzufall</id></properties>
</contributor>
<contributor>
<name>Philipp Hanslovsky</name>
<url>https://imagej.net/people/hanslovsky</url>
<properties><id>hanslovsky</id></properties>
</contributor>
</contributors>

Expand All @@ -81,21 +92,13 @@
</ciManagement>

<properties>
<scijava.jvm.version>8</scijava.jvm.version>
<package-name>sc.fiji.labkit.ui</package-name>
<license.licenseName>bsd_2</license.licenseName>
<license.copyrightOwners>Matthias Arzt</license.copyrightOwners>

<!-- NB: Deploy releases to the SciJava Maven repository. -->
<releaseProfiles>sign,deploy-to-scijava</releaseProfiles>

<imglib2.version>7.1.0</imglib2.version>
<imglib2-realtransform.version>4.0.3</imglib2-realtransform.version>
<imglib2-roi.version>0.15.0</imglib2-roi.version>
<imglib2-cache.version>1.0.0-beta-18</imglib2-cache.version>
<imglib2-algorithm.version>0.15.3</imglib2-algorithm.version>
<bigdataviewer-core.version>10.6.0</bigdataviewer-core.version>
<labkit-pixel-classification.version>0.1.18</labkit-pixel-classification.version>
<spim_data.version>2.3.4</spim_data.version>
</properties>

<dependencies>
Expand Down Expand Up @@ -213,6 +216,10 @@
<groupId>io.scif</groupId>
<artifactId>scifio</artifactId>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-core</artifactId>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.dataformat</groupId>
<artifactId>jackson-dataformat-yaml</artifactId>
Expand All @@ -232,11 +239,14 @@
<artifactId>jmh-core</artifactId>
<scope>test</scope>
</dependency>

<!-- NOTE: Needed for benchmarks. -->
<dependency>
<groupId>org.openjdk.jmh</groupId>
<artifactId>jmh-generator-annprocess</artifactId>
<scope>test</scope>
</dependency>

<dependency>
<groupId>net.imagej</groupId>
<artifactId>imagej</artifactId>
Expand All @@ -252,6 +262,13 @@
<artifactId>ij1-patcher</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>commons-lang</groupId>
<artifactId>commons-lang</artifactId>
<scope>test</scope>
</dependency>

<!-- NOTE: Needed for Weka's CLIJ2 support. -->
<dependency>
<groupId>net.haesleinhuepf</groupId>
<artifactId>clij2_</artifactId>
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/ActionsAndBehaviours.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/BasicLabelingComponent.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/BatchSegmenter.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/DefaultExtensible.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/Extensible.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/InitialLabeling.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/LabelingComponent.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/LabkitFrame.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/Main.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/MenuBar.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/Preferences.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/SegmentationComponent.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/actions/AbstractFileIoAction.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/actions/AddLabelingIoAction.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/actions/BatchSegmentAction.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/actions/BitmapImportExportAction.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/actions/ClassifierIoAction.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/actions/ClassifierSettingsAction.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/actions/LabelEditAction.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/actions/LabelingIoAction.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/actions/ResetViewAction.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/actions/SegmentationAsLabelAction.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/actions/SegmentationExportAction.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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2 changes: 1 addition & 1 deletion src/main/java/sc/fiji/labkit/ui/actions/SetLabelsAction.java
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* #%L
* The Labkit image segmentation tool for Fiji.
* %%
* Copyright (C) 2017 - 2024 Matthias Arzt
* Copyright (C) 2017 - 2026 Matthias Arzt
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
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